Gossypium raimondii: 105804746
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Entry
105804746 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105804746 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105804746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105804746
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105804746
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105804746
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
105804746
NCBI-ProteinID:
XP_012492935
UniProt:
A0A0D2TNC5
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Position
11:complement(9701472..9709266)
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AA seq
887 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKTKPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYNSLALDKVDA
LEDLVAIGPLSKAAPILGLKPSLASSTSQGPQVSSSLEHAEDSASQDSNSDIARTPPSKS
CAITSATATPSGSHPIPAPLNLSPHSLSGASTPPIVLPGSSSARSVLENTGTTNPSSPVN
LPNATKEEDITSFPGRRPSPSLTDTGVRGIARGGLSGQPSSSIPLVSGSVASGNGALGAV
PSVSDMAKRTILGTDERPGNSSMVQSLVSPLSNRMMLPQTAKANDGSASVDSSNPSESAG
IPGRVFSPSMVSGMQWRPGSSFQNQNDPGQFRGRTEIAPDMREKYLQRLQQVQQQGHSNL
LGVPLAGGNLKQFSAQQAPLMQQFNSQSSSLSLQSGLGLGGQAPGFNSVTAASLQQQQNP
MQQQSSQQALATSVPKDGDVGNAKVEEQQPHNLPDDSSSEAVPTSGLAKNLMNEDEMKTQ
YAIDSPAAVSGSLTEPAPVIRDVDLFPGQPLQSNHSSSGLGVIGWRSVTDFGAIGDNLSG
SMNTGGMHDQLYNLQMLEASYYKIPQPKDSERARSYTPKHPAATPASYPQVQAPIVNNPA
FWERISLDGYGTGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKI
ATDEFEQGTYVYFDFHIANDDHQHGWCQRIKTEFTFEYNYLEDELIC
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgcaagcttcaaggagaaatcgatcgtgttctgaagaaggtccaggaa
ggcgttgatgtcttcgatagcatctggaacaaggtttatgatactgataatgcgaatcag
aaggaaaagtttgaggcagacttgaagaaggaaatcaaaaagctgcaaaggtacagggac
cagatcaagacatggattcagtccagtgagatcaaggataaaaaagttagtgcatcttat
gagcaggccctggtggatgctcggaaacaaattgagcgtgaaatggaaagatttaagata
tgtgaaaaagagactaagacaaaagcattctctaaagaaggcttgggtcaacagcctaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttgaacaatgtggttgga
gagttggaatcccagattgatagttttgaagctgagattgaagggctttctgtgaagaaa
gggaagacaaaaccacctagactgacacacttggagacatcaattacccggcacaaagct
catataatgaagttagaattgattttgagattattggataatgatgaattgagtccagag
caggtcaatgatgtgaaagacttcttggacgattatgttgaacgtaatcaggaggacttt
gatgaatttagtgatgttgatgagctctacaactctttagctttagacaaggtggatgct
cttgaagatctggttgctattggtcctctttccaaggctgcaccgattcttggattgaag
ccatctttggcatcatcaacatctcaagggccgcaggttagttcctccctggagcatgca
gaagattcagcttcccaggatagtaattctgatatagcaaggactccaccttcaaaaagt
tgcgcaattacttctgctacagcaacaccgagtggaagccatccaatccctgctccactg
aatctttcacctcatagtttgtctggtgcttcaacgcctccaattgttcttccgggttca
agttctgctcgaagtgttttggaaaacacaggcaccaccaatccgtcatctcctgtaaat
ttgccaaatgctacaaaagaagaagatatcacaagcttccctggccgtaggccttctcca
tctcttactgatactggagtacgaggcattgctagaggaggcctctcaggtcagccttca
tctagtattccccttgtttctggaagtgtggcttctggcaatggagcccttggtgcggtc
ccttcagtctctgacatggcaaaaagaactattttggggactgatgaaagacctggaaac
agtagcatggtgcaatctttggtatcccctcttagtaacagaatgatgttgcctcagaca
gccaaggctaatgatggaagtgcatctgttgattctagtaatcctagtgaatctgctgga
atacccggcagagttttttccccttcaatggtttctggtatgcagtggaggcctggaagc
tcctttcagaatcaaaatgacccggggcagtttcgtggaagaactgagatagcacctgat
atgagggaaaaatatttgcaacggctccaacaagtgcagcaacaaggccatagcaacctg
cttggtgtgcctctcgccggaggaaatcttaagcagttttctgcacaacaagccccactc
atgcagcagttcaattctcaaagctcttcactctctctccaatcgggtctaggacttggt
ggccaagcacctggttttaatagtgtaacagctgccagcttacagcagcaacaaaatccc
atgcaacaacagtctagtcaacaggcattggcaacaagtgttccaaaggatggggatgtt
gggaatgcaaaagttgaggaacaacaaccgcacaatttacctgatgattcaagttctgaa
gctgttccaacttctgggcttgccaagaatcttatgaacgaggatgagatgaaaactcag
tatgcgattgattctccggctgctgtatcaggctcgttgacagaacctgctccagttatt
agggatgttgatctttttcctgggcaacccttacaatctaaccactcttctagtggactt
ggcgttattggctggagaagtgttactgattttggtgccattggtgacaacctcagtggc
tcaatgaatactggaggaatgcatgatcaactatacaatttgcagatgcttgaggcttca
tactataaaattccccaacctaaagactcagaacgtgctaggagctacactccaaaacac
cctgctgcaacacctgctagctaccctcaagttcaggcaccgattgtgaataatcctgcc
ttctgggaacgcataagcttagatgggtatggcactggcactgatacactgttctttgca
ttttattatcagcagaatacttaccaacaatatctggccgcaaaggaactgaagaagcag
tcttggagataccacagaaaatacaacacatggtttcagcggcatgaggaaccaaaaatc
gccactgatgaatttgaacagggaacgtatgtatactttgattttcacatagcaaatgat
gaccaccaacatggatggtgtcagagaattaagacggagttcacatttgagtataactat
cttgaagatgaacttatttgctga
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