Granulicella sp. 5B5: GOB94_05100
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Entry
GOB94_05100 CDS
T08433
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
grb
Granulicella sp. 5B5
Pathway
grb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
grb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GOB94_05100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grb03021
]
GOB94_05100 (rpoC)
03400 DNA repair and recombination proteins [BR:
grb03400
]
GOB94_05100 (rpoC)
Enzymes [BR:
grb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GOB94_05100 (rpoC)
Transcription machinery [BR:
grb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GOB94_05100 (rpoC)
DNA repair and recombination proteins [BR:
grb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GOB94_05100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Activator-TraM
DUF7489
Motif
Other DBs
NCBI-ProteinID:
QMV18138
UniProt:
A0A7D7X8J9
LinkDB
All DBs
Position
complement(1188759..1192949)
Genome browser
AA seq
1396 aa
AA seq
DB search
MFRSSPFEATGPITDFDSIKIQLASPEKIRSWSHGEVTKPETINYRTFKPERDGLFCARI
FGPITDWECLCGKYKRMKHRGVICDKCGVEVTLSKVRRERLGHIELASPCSHVWFFKGLP
SRIGHLLDISLRELEAVLYFESYVVVDPGDAPVKEREVIKDENRFRELDQQYRPSGFKAM
MGAEAIKELLKRVEVQELSIELRERMKTETSLQKKLKYAKRLKVVEAFKRSDNKPQWMIL
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMDLHAPEVIVRNEKRML
QEAVDALFDNGRRGRVLRGANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYHRLEQTGHCTTIKQAKEMVEQQESIVWDILEEVIKDH
PVLLNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIE
ASVLMLASHNILSPASGNPITVPTQDLVLGLYYLTKAKVAAKGEGRTFANIDEVLMALEA
KQVETLTPIRLRYTGPVLDMTVAYDDQDILHTEAVEFNKQFISTTVGRAILNDSLPEGMP
YVNGLMKKKGIGQLINYLYLNLGLEVTVHALDKIKELGFQYATRSGLSVGLDDMVIPDSK
YTVVHEAEKQVIAMQQQYLDGSITNLERSNKVTQMWSGVTERVADDMFNNMKRADKEGTM
NPIYIMADSGARGSKQQIRQLSGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGA
RKGLADTALKTADSGYLTRRLVDVAQDVIISELDCGTVEGIYVMPIIEAGETIEPLRDRI
IGRVSLEKLKDFEGKVIVDVNEEIDEEKASAVQAAGIEKVKIRSVLTCESKRGCCILCYG
RNLGSGKMVEMGEAVGVIAAQSIGEPGTQLTMRTFHVGGTASRAAESSHLEAKNDGKVVF
INLVTVRSKEGGLVAFNRNGSIAIIDAKGREKERYSIVYGAKLKVEDGQAVKLGDVIGEW
DPYTFSILTEIAGTVQFKDLQEGLTLNEEIDEVTGLSRLVVADSSDEKRQPTIIIKSAKG
NKRYLMPSRAHLMVQDGDEVTPGDVLAKIPRETTRTKDITGGLPRVVELFEARKPRDPAI
ISKIDGVVRFGDVSKGQRKVYVTADNGQEEEYSVPRGVYINVQEGERLRAGDALIDGPRN
PHDILEVLGERELQMYLVNEIQEVYRLQGVSISDKHIETIVRQMLRWVKVEEVGDTSFLL
EQQIDRFRFNAENQRVLIEGGRPAIGRPLLLGITKASLSTDSFISAASFQETTRVLTEAS
INGSVDTLRGLKENVIVGRLIPAGTGMEYYRNVQLSPELEEAAAQVQQEVTAAIEAEERE
LEQMRMEGEQEEMAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttcaagcccctttgaagcaaccggtccgatcacggacttcgattccatcaag
attcaactggccagccccgagaagatccgctcgtggtcgcatggcgaggtcaccaagccg
gagaccatcaactaccgtacgttcaagcctgagcgtgacggccttttctgcgcgcggatc
tttggaccgatcaccgactgggagtgcctgtgcggcaagtacaagcgcatgaagcaccgt
ggcgtgatctgcgacaagtgcggcgttgaagtgacgttgagcaaggttcgccgtgagcgg
ctcggtcatatcgagctggcttcgccgtgctcgcacgtatggttcttcaagggcctgcct
tcgcgtatcggccacctgctggacatctcgctgcgcgagctcgaggctgtgctgtacttc
gagagctacgttgtggtcgatcccggcgacgcgcctgtgaaggagcgcgaggtgatcaag
gacgagaaccgcttccgcgagctcgaccagcagtaccggccttcgggcttcaaggcgatg
atgggcgctgaggccatcaaggagctgttgaagcgcgttgaggtgcaggagctttccatc
gagctgcgcgagcgcatgaagaccgagacctcgctgcagaagaagctgaagtatgccaag
cggctgaaggttgttgaggcgttcaagcgctcggacaataagccgcagtggatgatcctg
gatgtgatcccggtgatcccacctgagctgcgcccgctggtgccgctggatggtggccgc
ttcgcgacgtccgatctgaacgatctgtatcgccgcgtgatcaaccgcaataaccgcctc
aagaagctcatggatcttcatgctcctgaggtcattgtgcgcaacgaaaagcgcatgctg
caggaggctgtggacgcgctgttcgataacggccgccgcggccgcgtgctgcgcggtgcg
aacaaccgtccgctgaagtcgctctcggatacgctgaagggcaagcagggccggttccgt
cagaacctgctcggcaagcgcgtggactactcgggacgttcggtgatcgtggttggtcct
gaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagttgttcaagccg
tttatctatcaccgcctggagcagacgggccactgcacgaccatcaagcaggccaaggag
atggtggagcagcaggagtcgatcgtctgggacattcttgaagaggtcatcaaggaccat
cctgtgctgctgaaccgcgcgccgacgctgcatcgtctgggtatccaggcgtttgagccg
gtgcttgtggaaggcaaggccatcaagattcacccgctcgtctgcacggcgttcaacgcc
gacttcgacggtgaccagatggcggtacacattccgctgagccccgaggcgcagatcgag
gcttcggtgctgatgctggcatcgcacaacatcctctcgccggcgagcggcaacccgatc
acggtgccgacgcaggatctcgtgctgggtctgtactacctgaccaaggcaaaggttgcg
gcgaagggcgaaggccgcacattcgccaacatcgatgaagtgctgatggcgctcgaggcc
aagcaggtggagacgctgacgccgatccgtctgcgctacaccggccccgtgctcgacatg
accgttgcgtatgacgatcaggacatcctgcacacggaggctgtcgagttcaacaagcag
ttcatcagcacgaccgtgggccgcgcgattttgaacgattcgctgcccgagggcatgccg
tatgtgaacggcctaatgaagaagaagggcatcggacagctgatcaactacctgtacctg
aacctcgggctcgaggtgacggtgcatgcgctggacaagatcaaggaactgggcttccag
tacgcgacgcgttcgggactctcggttggcctggatgacatggtcattcccgattcgaag
tacaccgtggtgcatgaggctgagaagcaggtcattgcgatgcagcagcagtacctggat
ggctcgatcacgaacctggagcggtcgaacaaggtgacgcagatgtggtccggtgtgacc
gagcgcgtggccgacgacatgttcaacaacatgaagcgcgcggacaaggaagggaccatg
aacccgatctacatcatggccgactccggtgcgcgtggttcgaagcagcagattcgtcag
ctgagcggtatgcgcggactgatggccaagccttcgggcgagatcatcgagacgccgatc
acggcgaacttccgtgaaggcctcaccgttctgcagtacttcatctcgacgcacggcgct
cgtaaggggcttgcggatacggcgctgaagacggcggactcgggctacctgactcgccgc
ctggtcgacgtagcgcaggacgtgatcatctcggagctggattgcggcacggtggaaggc
atctatgtgatgccgatcatcgaggccggcgagacgatcgagccgctgcgtgaccgcatc
atcggccgcgtgtcgctcgaaaagctgaaggacttcgagggcaaggtcatcgtcgatgtg
aacgaagagatcgacgaggagaaggcaagcgcggtgcaggctgccggtatcgagaaggtg
aagatccgctcggtgctgacctgcgagtcgaagcgcggatgctgcatcctttgctacggc
cgcaacctgggctcgggcaagatggtcgagatgggcgaggccgtgggtgtgatcgcggcg
cagtcgatcggcgagccgggcacgcagctgacgatgcgtacgttccacgtgggtggtaca
gcgtcgcgtgcggctgagtcctcgcaccttgaggcgaagaacgatggcaaggtggtgttc
atcaaccttgtgaccgttcgctcgaaggaaggcggactcgtggccttcaaccgtaatggt
tcaatcgcgatcatcgatgcgaagggccgtgagaaggagcgctactcgatcgtgtacggc
gcgaagctgaaggtggaggacggacaggcggtgaagctcggcgatgtgatcggcgagtgg
gacccgtacacgttctcgatcctgacggagatcgccggtacggtgcagttcaaggacctg
caggaaggtctgacgctgaacgaagagatcgacgaagtgaccgggctttcgcgccttgtc
gtcgccgactcctcggatgagaagcgtcagccgacgatcatcatcaagagtgcgaagggc
aacaagcggtacctgatgccttcgcgtgctcacctgatggtgcaggatggcgacgaggtc
acgccgggcgatgtgctggcgaagatcccgcgcgagacgacccgcaccaaggacatcacg
ggcggtctgccgcgcgtggttgagctgttcgaggcacgcaagccgcgtgatccggcgatc
atctcgaagatcgacggtgtggttcgctttggcgatgtcagcaagggccagcgcaaggtg
tacgtgaccgcggacaacgggcaggaagaggagtacagcgtgcctcgcggtgtgtacatc
aacgtgcaggaaggcgagcgtctgcgcgccggcgatgcactgatcgatggaccgcgtaat
cctcacgacatccttgaggtgctgggcgagcgcgagctgcagatgtacctggtgaacgag
atccaggaagtctaccggctgcagggcgtgtcgatctcggacaagcacatcgagacgatc
gttcggcagatgctgcgttgggtgaaggtggaagaggtcggcgatacgagcttcctgctc
gagcagcagatcgaccgcttccgtttcaacgcagagaaccagcgcgtgctgatcgaaggt
ggccgtccggccatcggacgtccgctgctgctgggcatcacgaaggcgtccctgtcgacc
gacagcttcatctcggcggcgagcttccaggagacgacgcgtgtgctgaccgaggcttcc
atcaacggctcggtggatacgctgcgcggtctgaaggagaacgtgatcgtgggtcgcctg
atccctgccggtaccggcatggagtactaccgcaacgttcagctctctccagagctggaa
gaggcggcagcgcaggtgcagcaggaggtcactgcggcgatcgaagccgaagagcgcgaa
ctggaacagatgcgcatggaaggcgagcaggaagagatggccgccgagtaa
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integrated database retrieval system
