Gracilibacillus salitolerans: GI584_00500
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Entry
GI584_00500 CDS
T06279
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
grc
Gracilibacillus salitolerans
Pathway
grc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
grc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GI584_00500 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grc03400
]
GI584_00500 (mfd)
Enzymes [BR:
grc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GI584_00500 (mfd)
DNA repair and recombination proteins [BR:
grc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GI584_00500 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
TBP-TOTE
Motif
Other DBs
NCBI-ProteinID:
QGH32651
UniProt:
A0A5Q2TEW9
LinkDB
All DBs
Position
92036..95569
Genome browser
AA seq
1177 aa
AA seq
DB search
MYEIKQYLQNRDDVYSIINGIESGLKEQLVSGLSGSARSMFTTLIQEATRKKTLIVTHQL
TQAQQLYEDMLEFSEQKDVYLYPVNELLASELAIASPELLSQRISALTNWLNKDHAILIA
PVAALKRMLPPMEYWQTYQLHFELEQVINIDQTLEYLVEMGYIRQDMASSPGEFSLRGGI
LDIYPITEAQPLRIELFDDEIDSIRYYDAESQRSLEKQEQITVVPTTELLLKDSDLVAAA
QKLEQSLNKTVKKIKNKSDQQVLTETITADIDRLDHCERFQEMRKYASFFYDNNYSLLDY
LPEDGYIILDEMSRIQETASHLDNEEQEWLKDNLQRGKAVSDSRLSFDWHQVWGNMKQQR
LYLSVFLRHIPNTNPSNIVNLSCRAMQQFHGQMNLLENEMDRWHKGEFSVIILAPNPGRM
EKIQSVLEDYQMSATISETLPNLPIQQPVITIGNVSGGFELPMHKIAVITENELFKQKTT
RKKRKPKISNAERIKSYQELQVGDYVVHANHGIGRYIGIETLEVNGLHKDFMLVKYSGDD
KLFVPIDQIDLVQKYVGSEGKEPKLYRLGGNDWKKVKSKVQSKVEDIADDLMKLYAEREA
ARGYAFSPDSEMQRDFELSFPYQETEDQLRCIEEIKQDMEKERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVAILVPTTILAQQHYETVMERFQDYPINIGLLSRFRTRKQQTETLK
GLKNGTVDIVIGTHRLLSKDVIYKELGLLVVDEEQRFGVKHKEKIKQLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNAPLVREAIERELSRGGQVFFLYN
RVESIDKIAQDIQALVEDARVSVAHGQMNESELENVMFSFLEGEADVLVSTTIIETGVDI
PNVNTLIVYGADRMGLSQLYQLRGRVGRSNRVAYAYFTYQQNKILTEVSEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDMYSQMLNEAVEAKKQGKAVEEVQP
FEVELDLKIDAYIPDSYIQDEKQKIDMYKRFQAIYSQEDIHDLREELIDRFGDYPEEVEN
LFHVSTLKMMSKKERIEAITERKQKIEVLVEDERSQELDGAKLFEFANQYGRLIQLGTEN
RKLKVQFHFDKSQYVKRYEILEEFIQTLNEMKQTPVA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaaataaaacaatacttacaaaatcgcgatgatgtctattcaattattaatggg
atagaatccggtttaaaggaacaattagtctctgggttatctggttctgctagaagtatg
tttacgaccctgattcaagaagctactcgcaagaaaactttaatcgttacccatcaatta
acacaagcacaacaattatatgaagatatgttagagttttcggaacagaaagatgtatat
ctttatccagtaaatgagttactggcttctgaattagcaattgcgagtccggaattatta
agccaacgaatttctgcactgacaaattggcttaataaggatcatgcaattttaattgct
ccagtagcagccttaaaacgaatgctaccacccatggagtattggcagacgtatcagctt
cattttgagctagagcaggttataaacatcgatcaaacattagaatatttagttgaaatg
ggctatattcgacaggatatggcttcaagtcccggtgagtttagtctgcgtggtgggatc
ttagatatttatcctataacagaagcacaaccacttcggattgaattatttgacgatgaa
atcgattcgattcgttattatgatgcagagtcacaacggtcattggaaaagcaagaacag
attacagttgtccctacgacagaattgttattaaaagatagtgacttagtcgctgctgct
cagaaattagaacagtcattaaataaaacggttaaaaagattaagaataaatctgatcaa
caagtactcacagagacgattactgcggacatagatcgtctagatcattgtgagcgtttt
caagaaatgagaaagtatgcatcatttttctacgataacaactatagtttactagattat
ttaccagaagatggctatattatattagatgaaatgagcagaattcaggaaaccgcctct
catttagataacgaagaacaagaatggctaaaagataatctacaacgaggtaaagctgtt
agtgattctaggttatcgtttgattggcatcaagtgtggggtaatatgaagcaacagcgg
ttatatctttctgtttttttacgtcatattccaaacacgaatccatctaatattgtgaat
ctctcatgtcgggcaatgcaacagtttcacggacaaatgaatttattagaaaatgaaatg
gatagatggcataaaggggaattctctgtcattattctggcaccaaatccaggtagaatg
gaaaaaatccaatctgtactagaagattatcagatgagtgcaacgataagtgagacatta
ccgaatttgccgattcagcaacctgtcatcaccattggtaatgttagcggtggttttgaa
ttaccaatgcataaaattgccgttataacggagaatgagttgtttaaacaaaaaacaact
agaaaaaaacggaaaccaaaaatttcgaatgcggagcgaattaaaagttatcaagaatta
caagtcggtgactatgttgtacatgcgaaccatggtattggtcgatatattggtattgaa
acattagaagtgaatggcttgcataaagattttatgctcgttaaatattcaggagatgat
aagcttttcgtaccgatagatcaaattgatttagtacagaaatatgttggttcagaaggc
aaggagcctaaattatatcgtttaggcggaaatgactggaagaaggtaaaaagcaaagta
caatctaaagtggaagacattgccgacgatttgatgaaattatatgcagaaagagaagct
gctagaggttatgcattttcgccagattctgaaatgcaacgagattttgaattatctttt
ccgtatcaggaaacagaagatcaattgcgctgtatcgaagaaattaagcaagatatggag
aaagaacgaccaatggatcgcctactttgtggagatgttggttatggcaagaccgaagta
gcgattcgtgcggcatttaaagcaatagcagatggtaagcaagtagcgattctggtacct
acgactattttagctcaacagcattatgaaacggtaatggagaggttccaggattacccg
attaatattggtttattaagccgttttcgaacgagaaaacagcaaacagaaacattaaaa
ggtttaaagaatggcacagtagatattgtaattggaacacatcgattattatcaaaggat
gttatctataaggaattaggactgctagttgtcgatgaagagcaacgttttggagtgaaa
cataaagagaagatcaaacaattaaaaactaatgtagatgtgttgaccttaacggctaca
ccaataccaagaacattgcatatgtcgatgttaggtgtgcgtgatttatcggtgattgaa
acaccaccagaaaatcgcttcccaattcagacatatgtcatggaatataatgcaccttta
gtaagggaagcaattgaacgggagttatctcgaggaggtcaagtattctttttatacaat
cgagtcgaatccatcgataaaattgcgcaagacatacaagcactagtggaggatgcacgg
gtatctgttgctcacggacagatgaatgaatcggaactagagaatgtaatgttctccttt
ttagaaggggaagcagatgtattagtgagtacaacgattattgaaacgggggtagacatt
cccaatgtaaataccttaatcgtctatggtgctgatcgtatgggacttagtcagttatac
cagctgcgtgggcgagtaggacgttcaaatcgtgttgcttatgcttatttcacctatcag
caaaataaaattttaactgaagtttcagaaaaaagattgcaggcgatcaaagaattcacc
gaattaggctcaggttttaagattgctatgcgtgacttatccatccgaggtgctggaaat
atattaggtgctcaacaacatggctttatcgactctgtcggtttcgatatgtactcgcag
atgttaaacgaagctgtggaagcgaaaaaacaaggtaaagctgttgaagaagtacagcca
tttgaagtggaattagacttaaaaattgatgcctatattccagatagttatatacaggat
gaaaaacaaaaaattgatatgtataaacgatttcaggctatttattcacaagaagatatt
catgatttgcgagaggaactgattgatcgttttggtgattatccggaagaagtcgaaaat
ctcttccatgtatcaactctaaaaatgatgtccaaaaaagaacgaatcgaagcgatcaca
gaacgcaagcaaaaaatagaagtactagtagaagacgagagaagccaagaacttgatgga
gcaaaattatttgaatttgccaatcaatatggaaggttaatccagttgggtacagagaat
cgcaagttaaaagtgcagtttcactttgataagagtcaatatgttaagcgatacgaaatt
ttagaggagtttatccagacgctgaatgaaatgaaacaaacccctgtagcctaa
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