Gracilibacillus salitolerans: GI584_09015
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Entry
GI584_09015 CDS
T06279
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
grc
Gracilibacillus salitolerans
Pathway
grc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GI584_09015 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grc03019
]
GI584_09015 (rnr)
03016 Transfer RNA biogenesis [BR:
grc03016
]
GI584_09015 (rnr)
Enzymes [BR:
grc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GI584_09015 (rnr)
Messenger RNA biogenesis [BR:
grc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GI584_09015 (rnr)
Transfer RNA biogenesis [BR:
grc03016
]
Prokaryotic type
tRNA degradation factors
GI584_09015 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
OB_Dis3
OB_HELZ2
WHD_GPIID
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QGH34154
UniProt:
A0A5Q2TH33
LinkDB
All DBs
Position
1962567..1964846
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AA seq
759 aa
AA seq
DB search
MELLQQQIRDYFNENATKPLSVQEIEEILELEDADQFTELMKALNALEESGELIRTRKNR
YGLPEKMNLIRGTIQMHAKGFAFLIPDDEAMEDVYINHADLASAMNGDKVFVRVDRRDDD
GKRAEGVVVRVIERYSKEIIGTYEDNGAFGFVIADDKRIPNDIFVPKGAAKGAVGGHKVI
VEITKYPEGRMSAEGSVIEILGHKNDPGMDILSIIYKNGIAIDFPPEVLEQAENISEEIK
EEEIQGRHDLRDETIVTIDGADAKDLDDAVTVKKLDNGNYKLGVYIADVTHYVKEDSPID
KEAFERGTSAYLVDRVIPMIPHRLSNGICSLNPQVDRLVLGCDMEINTKGEVVNHEIFQA
VIKTTERMTYKAVNQILVENDQETIDRYESLVPMFKDMEDLAEILRGKRFGRGAIDFDFK
EAQVLVNDDGKAEDVVIRERSVGERLIEEFMLCANETIAEHFHWMDVPFIHRIHEDPDPA
KLQKFFEFIARFGYVVKGTSNEIHPQALQNVLDEVSGTDEDMIISKLMLRSMKQAKYDPN
GIGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLIENKLDEKTRQHWKDKMPVIAKQAS
LKERAAVDAEREVDDLKKAEYMQDKIGEEYEGVISSVTNFGLFVELPNTVEGLVHVSYLT
DDYYHFDEQAYAMIGERTGNVFQVGDPITIKVAQVNLDERAVDFEIVGMLPRKNKPSKEG
KVINAKRNNNGGLKKTAKKSQKTETNGKKKKKGRKKKKK
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggaattactacaacaacaaatacgagactattttaatgaaaatgctacaaaacctttg
tctgtacaggaaatagaagagattttagaactggaagatgcagatcaatttacggaattg
atgaaagcattaaatgcactggaagaatcaggtgaattaattcgaacccggaaaaatcgt
tatggtttacctgaaaaaatgaatttaatccgtggaacgattcagatgcatgcgaaagga
tttgcattcttaatcccggatgatgaagcgatggaagatgtttatattaatcatgcagac
ttagcttctgcaatgaatggggacaaggtttttgtccgtgtcgatcgacgtgatgatgat
ggaaaaagagcagaaggcgtcgtcgtaagggtcattgaacgttattcaaaggaaattatc
ggtacgtatgaagataacggtgcatttggttttgttatcgcagacgataaacgaatacca
aatgacatatttgtaccgaaaggagcagcaaaaggcgcagtaggtggccataaagttatc
gttgaaatcacaaaatatccagaaggtagaatgagtgctgaaggaagtgttattgaaatc
ctcggacataaaaatgaccctggcatggatattttatcgattatttataaaaacggtatc
gccattgattttccaccggaggtacttgaacaagcggaaaatatttccgaggaaattaaa
gaggaagaaatacaagggcgtcatgatcttcgggatgaaacaatcgttacaattgacggt
gcagatgcgaaggatttagatgatgcggtaacagttaaaaaattagataatggtaattat
aaattaggagtttatattgccgatgtcacccattatgtaaaggaagattcacctattgat
aaggaagcttttgagcgcggaacaagcgcatatttagttgaccgagttattccgatgatc
ccgcaccgtctatccaatggtatttgctctttaaatccacaggttgaccgtctggtatta
ggctgtgatatggagattaatacaaaaggtgaagtagtcaatcacgaaatatttcaagca
gtcatcaaaacaacggagcgaatgacctataaagcggtgaaccaaatattagtggaaaat
gatcaggaaacgatcgaccgttatgaatcattagtccctatgtttaaggatatggaagat
ttagccgagattttacgggggaaacgatttggtcgtggtgcgattgactttgattttaaa
gaagcacaagtattagtaaatgacgatggaaaagcagaggatgtcgtgattcgagaacgg
tcagtaggggaacgattaattgaagaatttatgttatgtgccaatgaaacaatagcggag
cattttcattggatggatgtaccttttattcatcggattcacgaagatccagatcctgct
aaattgcaaaaattctttgagtttatcgcaagattcggttatgtcgtaaaaggaacatcg
aatgaaattcatccgcaagctttacagaatgttttagatgaagtatcgggaacagatgaa
gatatgattatttcaaaactgatgttacgctcgatgaaacaagcgaagtatgatccgaat
gggattggacactttggattagcaaccgagttctatacacattttacgtcgccgatccga
agatacccggacttaatcgttcaccgtttaatccgcacctatttaattgaaaataaatta
gatgaaaagacaagacagcactggaaagataagatgccggtcattgcaaaacaagcttcg
ttaaaagaaagagcagcagtagacgctgagcgcgaagtagatgacctgaaaaaagcggaa
tacatgcaagataaaattggcgaagagtatgaaggtgtaatcagctccgttactaatttt
ggtctatttgttgaactgccaaatacagtagaaggtcttgttcatgtaagctatttaaca
gatgattattatcattttgacgaacaagcttatgcgatgatcggtgagagaaccggcaat
gtatttcaagtcggtgatccgatcacgataaaagtcgcccaagttaatttagatgagcga
gctgttgattttgagattgtcgggatgttaccgagaaaaaacaaaccgtctaaagaagga
aaagtcataaatgcaaagcgtaataataatggtggactaaagaagacagcaaaaaaatcc
caaaaaactgaaacaaatggcaagaaaaagaaaaaaggacgtaaaaagaagaaaaaataa
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