Gracilibacillus salitolerans: GI584_10195
Help
Entry
GI584_10195 CDS
T06279
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
grc
Gracilibacillus salitolerans
Pathway
grc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GI584_10195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grc03019
]
GI584_10195
Messenger RNA biogenesis [BR:
grc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GI584_10195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Raco_middle
Motif
Other DBs
NCBI-ProteinID:
QGH34371
UniProt:
A0A5Q2TJQ9
LinkDB
All DBs
Position
complement(2196094..2197761)
Genome browser
AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFITHGHEDHIGGLPYLLREINVPIYAGKLAVGLIRNKLDEHGLLRKTKLH
TFQEDDVIKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLAK
MAEIGKEGVLCLLSDSTNSEVPGFTLSERVVGDSINDIFSRVDGRLIFATFASNIHRLQQ
VVEAAVKHNRKVAVFGRSMEGSIKIGQELGYIRAPKNTFIEPNQINQLPANEVTILCTGS
QGEPMAALSRVANGTHRQIQIIPGDTVVFSSSPIPGNTLSVSRIINQLYRAGAEVIHGPL
NDIHTSGHGGQQEQKLMLRLIQPKYFMPIHGEYRMLKEHTKLADSCGIPPKNSFIMDNGE
VLALGKDSAAIAGKIPSGSVYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFQI
ASGPDIISRGFVYMRESEDLINEAQKLVSKHLNKVMERRTTQWSEIKNEINDTIAPFLYD
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgaccaaacagcagtttttgctcttggtggtttgggtgaaatt
ggtaaaaacacttatggtgttcaattccaagacgaaatcatccttatcgatgcaggaata
aaatttcctgaagatgaactattaggaattgattatgtcattcctgattacacctacctt
gtgcaaaaccaagataaaataaaaggtttattcatcacacatggtcacgaagaccatatt
ggtgggctaccttatttactacgtgaaataaatgtgcctatttatgctggtaaattagca
gttggacttattcgaaataaattggatgaacatggattattacgcaagactaaattacac
accttccaagaagatgatgtaataaagtttagaaaaacagctgtgtccttcttccgaacg
acacatagtattcccgattcttatggtattgttgtaaaaacacctccaggaaatattgtt
catactggagactttaaatttgatttcacaccagttggagaacctgccaacttggcaaaa
atggctgaaatcggtaaagaaggcgttctttgcttattatcagacagtacaaacagtgaa
gttcctggatttacattatcagaacgtgtagttggtgacagcattaatgatattttctca
agagtggatggcagattaatttttgctactttcgcttcaaacattcaccgcttgcagcaa
gtcgttgaagcagccgttaaacataaccgtaaagttgctgtattcggacgaagcatggaa
ggctccattaagattggacaagagctcggatatattcgcgctcctaaaaatacgtttatc
gaaccaaatcagataaaccaacttcccgctaacgaagtgacgatcctttgtaccggttca
caaggagaaccaatggctgcattatctagagttgcgaacggtacacaccgtcaaattcag
attatacctggtgacacagttgtattctcttcttcaccaatccctgggaatacattaagt
gttagtagaattattaatcaattgtaccgtgccggtgctgaagttattcatggaccactt
aatgatatccatacctcgggtcacggtggtcaacaagaacaaaaattaatgctacgtctt
attcaacctaaatatttcatgcctatccatggagagtatcgtatgttgaaagaacatacg
aaattggcagatagctgtggtatcccacctaagaatagctttattatggacaatggagaa
gtattagcattaggaaaagatagtgctgcgattgctggtaaaattccttctggctcagtc
tatgtagacggtagtggaattggagatattggtaatattgtattacgtgatcgacgtatc
ctttccgaagaaggactagttatcgttgtcgtaagtatcaatatgaaagagtttcaaatc
gcatcaggtccagacattatatcacgtggatttgtctatatgcgagaatctgaagactta
attaacgaggctcaaaagcttgtatccaaacacttaaataaggtaatggaacgccggact
actcagtggtctgaaatcaaaaatgaaattaatgatacaatcgcaccattcctttatgat
aaaacaaaacgtcgtccaatgatcttaccaattattatggaagtataa
DBGET
integrated database retrieval system
