Garra rufa (doctor fish): 141283131
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Entry
141283131 CDS
T11039
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf00100
Steroid biosynthesis
grf01100
Metabolic pathways
Module
grf_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
141283131
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
grf01006
]
141283131
Enzymes [BR:
grf01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
141283131
Prenyltransferases [BR:
grf01006
]
Terpene biosynthesis
Squalene/phytoene synthase
141283131
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
GST_C_8
Motif
Other DBs
NCBI-GeneID:
141283131
NCBI-ProteinID:
XP_073672506
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Position
13:45740010..45758450
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AA seq
448 aa
AA seq
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MAGVSGKSAVSFSVLKRSFSLRGSPRSVLTGGRRSAQEGRLMARPPHPLRTHRHPAYVCF
SCQDSMSETLRTCYAYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMSIPL
ETKVPLLHDFHTFLYQPEWCFTESKEKDRQVLADFPTISVEFRNLGQEYRDVITDICHRM
GVGMAEFLEKKVSSMKEWDKYCHYVAGLVGIGLSRLFSASQLEDPEVGRDTELANSMGLF
LQKTNIIRDYLEDQQEGRAFWPQEAWSQFAARLEDFAHPQHLSSALSCLNLLVTDALHHV
PDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQAVTLMMQATS
MGAVQSIIAQYSQEILQKVSVTDPSREKTLLILNVIREKSLSPAALSSRAHHISPVYVSA
AMLLAALSWQYLNATAGQPPGGADMQGH
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggctggagtcagcggtaagagcgccgtgtcgttctccgtgctcaagcgctcgttctcc
ctgcgcggctccccgcgatcagtgctcactggcgggcggcggagcgcgcaggaagggcgg
ctgatggcccgtcctcctcacccgctccggactcaccgacaccccgcgtatgtgtgtttc
tcctgccaggactccatgagcgaaaccctgcggacctgctatgcctatctgaaccagacc
agccggagcttcgcggcggtgatccaggccctggacggagagctgcggcatgccgtgtgt
attttctacctggttctgcgagctctggacacagtggaggacgacatgagcatcccgctg
gagaccaaggtcccattgctgcacgacttccacacgttcctctatcagcccgaatggtgc
ttcactgagagcaaagagaaagaccggcaggtgctggcggatttccccacgatttcagtg
gagttcaggaatttgggccaggagtatcgggacgtgattacagatatttgtcaccggatg
ggtgtaggaatggctgaattcctagagaagaaggtttcttccatgaaggaatgggacaag
tactgtcattatgtggcgggtctggtggggatcggactgtcccgtctgttctcggcgtcc
caactggaggaccctgaggtgggtcgggacacagagctggccaactcaatgggtctgttc
ctccagaagaccaacatcatcagagactatttggaggaccagcaagagggacgggccttc
tggccgcaggaggcctggagtcagtttgcggcccgtctggaggatttcgctcatcctcag
cacctgagctctgccctgtcctgcctcaacctgctggtgaccgatgctctgcaccacgtc
ccggacgtcatcgcgtacctgtcccgcctccgcaaccagagcgtcttcaacttctgtgcc
attcctcaggtgatggcgatagcgactctgtcggcgtgttacaacaatccccaggtgttt
cagggtgtggtgaagatccggaagggtcaggcggtgacgctcatgatgcaggccacaagc
atgggcgccgtccagagcatcatcgcacagtacagtcaggagatcctgcagaaggtgtcc
gtcacagacccgtcccgtgagaagacgctgctcatcctgaacgtcatccgtgagaagagc
ctgtctccagccgcgttgtcgtctcgcgcgcaccacatctctccggtctacgtctcggcc
gccatgctgttagcggcactcagctggcagtacctgaacgctacggccggacagccacca
gggggtgcagacatgcagggacactga
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