Garra rufa (doctor fish): 141283145
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Entry
141283145 CDS
T11039
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141283145 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141283145 (cpsf2)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141283145 (cpsf2)
U7-dependent histone pre-mRNA processing factors
141283145 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
141283145
NCBI-ProteinID:
XP_073672519
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Position
13:38018079..38038761
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AA seq
787 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSLKRYVHQVDAVLL
SHPDQLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFSLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLETVSRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLSRVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLGRYLIDNPGEKRMDLEIRKRCRLEGRELEEYMEKEKMKKEAAKKLEQAKEVDMDSS
DESDMEDDLEQPAVVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRPEEFLVPELQATEEEKSKLESGLTNGEEPMEQDLSDVPTKCTSITQTLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLADSCKAFSGKDIKVYMPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVEKVDTGVIAEMGDAKEETED
GEPAMDVTPELTTEPSTAANQRAMKTLFGEDDREISEESDVIPTLEPLPAHEIPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEAGRICLEGCYCDDYYRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgacggctctttccggagtccaggaggaatcggctctatgt
tacctgttacaggtggacgaattccgcttcctgctggattgtggctgggatgaaagtttc
tccatggatattatagattccctgaagcggtatgtccatcaggtggacgcagtgctgctc
tctcaccccgatcagctgcatttgggagctttaccgtacgctgtgggtaaactgggactt
aattgcactatctacgccaccatacctgtctacaaaatgggccagatgttcatgtacgat
ctctatcagtctcgacacaacacagaagacttcagtctgttcacgctggatgacgtcgat
tcagcttttgacaaaatccagcagctgaaatactctcagatcgtcaacctgaaaggaaaa
ggtcacggtctgtccatcaccccacttcccgcgggtcacatgatcggtggcactatctgg
aaaatcgtgaaggatggagaggaagagatcatctatgctgtggatttcaaccacaagagg
gagattcacctgaacggctgctccctggagaccgtcagcagaccatctcttctcatcaca
gactccttcaacgcctcatacgttcagcctcgcagaaaacaacgtgacgagcagctgctc
accaatgtcatggagaccctccgtggcgatggtaacgtgctgatcgcagtggatacggcg
ggacgagtgctggaactggctcagctcctggatcaaatctggaggaccaaagacgcaggt
ttgggcgtttactcgctcgccctgctcaacaatgtcagctacaatgtggtggagttctca
aagtcccaggttgaatggatgagcgataaactgatgcgatgcttcgaggacaaacggaac
aaccctttccagttccgccacctctcgctctgtcacagcctggccgatctgtcccgcgtg
cccagcccgaaggtggttctgtgcagtcagcccgatctggagtccggcttctcacgggag
ctcttcatacagtggtgtcaggacgccaaaaactcagtcatcctcacctacaggaccaca
ccaggaacgctgggccgctacctcatagacaatccgggggagaagaggatggaccttgag
ataagaaaacgttgtcgactggaaggacgagaactagaggaatacatggagaaagagaaa
atgaagaaagaagctgccaaaaaactggagcaggcaaaagaggtggacatggactcgagc
gatgagagtgatatggaggacgatctggagcagccggcggtggtgaagaccaaacaccac
gacctgatgatgaagggcgagggcgggaggaagggcagcttcttcaaacaggccaaaaag
tcctaccccatgttccctacacacgaggagcgaatcaaatgggacgagtatggagaaatc
atcaggcccgaggagtttctggttcctgagctccaggccacagaagaggagaagagcaaa
ttggagtctggactgactaatggagaggagccaatggagcaggacttgtccgacgttccc
accaaatgcaccagcatcacacaaacactagagatcagagctcgagtcacgtacatcgat
tatgagggccgttctgacggggattctattaagaagatcataaaccagatgaaacccaga
cagctaatcatcgttcacgggccgcctgaggccagtcaggacctggccgactcctgcaag
gccttcagcgggaaagacatcaaagtttacatgccaaaactgcaggagacggtggatgcc
accagtgagacccacatttaccaggtcaggctgaaggactcgttggtcagttcgctgcag
ttctgtaaagccaaagacacagagctggcctggatcgatggcgttctggacatgcgcgtg
gagaaagtggacactggggtcattgccgagatgggagatgccaaagaggagacagaggac
ggagaaccggccatggacgtcacaccagagctgacgactgagcccagtaccgcagctaac
cagcgggccatgaaaactctgtttggagaggacgacagggagatttcagaggagagcgac
gtcattccaacgctggagccactgcctgctcatgagatcccgggtcatcagtctgtgttc
atcaacgagcctcgcctgtcggactttaagcaggttttgctgcgtgaagggatccaggca
gagtttgtgggtggagttctggtgtgtaataatctggtggctgtcaggaggacggaagcg
ggccgcatctgtctggaaggctgctactgtgatgactactacaggattcgtgagctgttg
tatcagcagtacgctgtagtttag
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