Garra rufa (doctor fish): 141283153
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Entry
141283153 CDS
T11039
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141283153 (ddx1)
03016 Transfer RNA biogenesis [BR:
grf03016
]
141283153 (ddx1)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141283153 (ddx1)
Spliceosome [BR:
grf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141283153 (ddx1)
Transfer RNA biogenesis [BR:
grf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
141283153 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
141283153
NCBI-ProteinID:
XP_073672530
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All DBs
Position
13:29588605..29599774
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRSTVKTGGAVFNKWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKAVTKGKYYYEVSCHDQGLCRVGWSTAQASLDLGTDKCGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDLDKSQLSFSKNGNDLGLAFEIPPQLKNQPFFASCVLKNAELKF
NFGDEPLKNQPKDGYLALNQAVDGHVVKSSQTGSAKVSQVKSSSNAPRALIIEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGYTDFIMRVYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRLWERLGKNHIRTDEVHTKDDTRPGAN
TSEMWSEAIKILKGEYVVRAIKEHKMDQAIIFCRTKIDCDNMEQHLIKQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKQEVRFLICTDVAARGIDIHGVPHVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCPSRGKSCYNTKLKDNGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRTGGGGLYKGHVDILAPTVQELANLER
EAQTSFLHLSYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcattcggagaaatgggagtgatgcctgaaattgcacaggcggtcgaggaaatg
gactggctgttgccaacagacattcaggccgaatccatcccactgattttaggcggagga
gacgtgctcatggctgctgagactggaagcggaaaaactggggcattcagtattccagtc
atccaaatagtctatgagacccttaaagaccagcaggaggggaagaagggacgcagtacg
gtgaagacaggaggagcagttttcaataaatggcagatgaacccctatgacagaagtact
gcatttgctattggtccagatggcctgtgttgtcagagcagagagttcaaagagtggcac
ggctgtcgttccaccaaagcagtcacaaaagggaagtattattatgaagtaagctgtcac
gatcaagggctgtgcagggtgggctggtccactgcccaagcatcactggacttgggaacg
gacaaatgtggatttggcttcggagggactggaaagaaatctcacaataagcagtttgat
agttatggagaggagttcactatgcatgatactatcggatgctacatagatctggataaa
agccaattgtcattctccaaaaatggtaatgatctgggtctggcttttgagatccctcca
cagctgaaaaaccagcccttctttgcttcctgtgtgcttaagaatgctgaactgaaattc
aactttggtgatgaacctttaaaaaaccaacctaaagatggatacttggccctgaaccag
gctgtagatggtcatgtggtcaaatccagccagacaggcagtgctaaagtgagtcaggtc
aaatccagttctaacgcccccagagctctcatcatcgagccgtctaaagagctggctgaa
caaaccctcaataacgtcaatcagttcaagaaatacgttgataaccccaaactgagggat
cttctgatcatcggaggagtggctgctaaagaacagctgtctgttttagaaagcggagtt
gacattgtggttgggaccccaggcagactggatgatctcatatccacaggaaagttggat
ctatcccaagtccgtttcctggtcctggatgagtgtgatggacttctctcagctggctac
actgatttcatcatgagggtctacaaccagatcccacaagtcacttcagacggcaagaga
ctacaggtgatagtttgctctgctacactgcactcatttgatgtgaagaagctctcagag
aagatcatgcatttcccaacatgggtggatctaaagggagaagattctgtaccagaaacg
gttcatcacgtggtggtgccagtcaacccaaaaactgacaggctttgggagagactggga
aagaaccacattaggacggatgaagttcacaccaaggatgacacacgacctggagccaac
acttcagagatgtggtcagaggctattaagattctgaagggagagtacgtggtcagagcc
attaaggagcataagatggatcaggccatcatcttctgcaggacaaagatcgactgtgac
aatatggagcagcacttaatcaagcagggaggagggccagacaagaaaggacaccagttt
tcttgtgtttgtcttcatggtgacaggaaaccaaatgagcgcaaatataacttagagcga
ttcaagaagcaagaggtaaggtttctgatttgcacagatgtggcggctagaggaattgat
attcatggcgttcctcatgtgataaatgtgactctaccagatgagaagcagaactatgtt
catcgcattggaagagttggcagagcggacaggatgggtttggctatatctctggttgct
atggagaaagagaaggtgtggtaccacgtttgtcccagcagaggaaaaagctgttataac
actaaactcaaagataacggaggatgtactatttggtacaatgagaaagaactgttgtca
gaaatcgaggaacatctgaaatgcaccattactcagtgtgaacctgacatcaaagttcct
gtggatgaatttgatggcaaagtgacttatgggcagcgcaggactggagggggtggtctc
tataagggccatgtggatatactggccccaaccgtacaggaactggctaacctggagaga
gaggcacaaacttccttccttcatctcagctatctacccaaccagctctttaaagccttc
tag
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