Garra rufa (doctor fish): 141283258
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Entry
141283258 CDS
T11039
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141283258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141283258
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141283258
U7-dependent histone pre-mRNA processing factors
141283258
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-GeneID:
141283258
NCBI-ProteinID:
XP_073672647
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Position
13:38072677..38090037
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AA seq
634 aa
AA seq
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MIGGTIWKIVKDGEEEIIYAVDFNHKREIHLNGCSLETVSRPSLLITDSFNASYVQPRRK
QRDEQLLTNVMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVS
YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLADLSRVPSPKVVLCSQPDL
ESGFSRELFIQWCQDAKNSVILTYRTTPGTLGRYLIDNPGEKRMDLEIRKRCRLEGRELE
EYMEKEKMKKEAAKKLEQAKEVDMDSSDESDMEDDLEQPAVVKTKHHDLMMKGEGGRKGS
FFKQAKKSYPMFPTHEERIKWDEYGEIIRPEEFLVPELQATEEEKSKLESGLTNGEEPME
QDLSDVPTKCTSITQTLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQ
DLADSCKAFSGKDIKVYMPKLQETVDATSETHIYQVRLKDSLVSSLQFCKAKDTELAWID
GVLDMRVEKVDTGVIAEMGDAKEETEDGEPAMDVTPELTTEPSTAANQRAMKTLFGEDDR
EISEESDVIPTLEPLPAHETPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNLV
AVRRTEAGRICLEGCYCDDYYRIRELLYQQYAVV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgatcggtggcactatctggaaaatcgtgaaggatggagaggaagagatcatctatgct
gtggatttcaaccacaagagggagattcacctgaacggctgctccctggagaccgtcagc
agaccatctcttctcatcacagactccttcaacgcctcatacgttcagcctcgcagaaaa
caacgtgacgagcagctgctcaccaatgtcatggagaccctccgtggcgatggtaacgtg
ctgatcgcagtggatacggcgggacgagtgctggaactggctcagctcctggatcaaatc
tggaggaccaaagacgcaggtttgggcgtttactcgctcgccctgctcaacaatgtcagc
tacaatgtggtggagttctcaaagtcccaggttgaatggatgagcgataaactgatgcga
tgcttcgaggacaaacggaacaaccctttccagttccgccacctctctctctgtcacagc
ctggccgatctgtcccgcgtgcccagcccgaaggtggttctgtgcagtcagcccgatctg
gagtccggcttctcacgggagctcttcatacagtggtgtcaggacgccaaaaactcagtc
atcctcacctacaggaccacaccaggaacgctgggccgctacctcatagacaatccgggg
gagaagaggatggaccttgagataagaaaacgttgtcgactggaaggacgagaactagag
gaatacatggagaaagagaaaatgaagaaagaagctgccaaaaaactggagcaggcaaaa
gaggtggacatggactcgagcgatgagagtgatatggaggacgatctggagcagccggcg
gtggtgaagaccaaacaccacgacctgatgatgaagggcgagggcgggaggaagggcagc
ttcttcaaacaggccaaaaagtcctaccccatgttccctacacacgaggagcgaatcaaa
tgggacgagtatggagaaatcatcaggcccgaggagtttctggttcctgagctccaggcc
acagaagaggagaagagcaaattggagtctggactgactaatggagaggagccaatggag
caggacttgtccgacgttcccaccaaatgcaccagcatcacgcaaacactagagatcaga
gctcgagtcacgtacatcgattatgagggccgttctgacggggattctattaagaagatc
ataaaccagatgaaacccagacagctaatcatcgttcacgggccgcctgaggccagtcag
gacctggccgactcctgcaaggccttcagcgggaaagacatcaaagtttacatgccaaaa
ctgcaggagacggtggatgccaccagtgagacccacatttaccaggtcaggctgaaggac
tcgttggtcagttcgctgcagttctgtaaagccaaagacacagagctggcctggatcgat
ggcgttctggacatgcgcgtggagaaagtggacactggggtcattgcagagatgggagat
gccaaagaggagacagaggacggagaaccggccatggacgtcacaccagagctgacgact
gagcccagtaccgcagctaaccagcgggccatgaaaactctgtttggagaggacgacagg
gagatttcagaggagagcgacgtcattccaacgctggagccactgcctgctcatgagacc
ccgggtcatcagtctgtgttcatcaacgagcctcgcctgtcggactttaagcaggttttg
ctgcgtgaagggatccaggcagagtttgtgggtggagttctggtgtgtaataatctggtg
gctgtcaggaggacggaagcgggccgcatctgtctggaaggctgctactgtgatgactac
tacaggattcgtgagctgttgtatcagcagtacgctgtagtttag
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