Garra rufa (doctor fish): 141283557
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Entry
141283557 CDS
T11039
Symbol
afdna
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
grf Garra rufa (doctor fish)
Pathway
grf04517
IgSF CAM signaling
grf04520
Adherens junction
grf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
141283557 (afdna)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
141283557 (afdna)
04530 Tight junction
141283557 (afdna)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RASSF8-10_RA
RA_3
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
141283557
NCBI-ProteinID:
XP_073672939
LinkDB
All DBs
Position
13:41267815..41430633
Genome browser
AA seq
1942 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKRTLINGPEKEKEGVIQNFKRTLSKKEKKKEKKREKEAFSRIPD
GDDHALNREDGENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRSGDG
RPDSGGTLRIYADSLKPNIPYKTILLSTTDMADFAVAEALEKYGLEKENPRDYCIAQVIH
ANDKPVKETILDDTDCPLQILRDWTSDKEALVFQLKKRPPDYAPRKGRKPDNRMGPPHGS
IPPEKLPYLVELSPGRGSHYAYYYRHHEDGSDSRDKPKLYRLQHSVTEVGSDQGEDGNIQ
LFGPGILPHHCDLMHEDGLVTVTPVSLDAETFVDGQRISDTTILRSGVTVQFGATHVFKF
VDPSYDHSMSKRDPGPMMKARHKSGSVPETTFDLHGDVHSGSALPTSKSSGKLEMERSGN
SERGLVKPMIRGEQQDFNKHDGRSQDGPELILPASIEFRENSEDAFLSAIINYTNSSTVH
FKLSPTYVLYMTCRYVMSSQYRPDISPSERTHKVIAIVNKMVSMMEGVIQEIAEGDQKQK
NIAGALAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVHCLQSDLNNYM
PAFLEDPDEQNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFVNMWLFNKL
VTEADSGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSMQD
VQNINNTCFKLNSLQLNALLSNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGREVQ
LEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLEPLCQRGFCRLTPHPRSPGTWTIYFE
GADCDSHFSADTSELPMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQDKLGIYIKSVVKGG
AADIDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLS
QPSPMMPRASDRGRGDKGKLRPKSEGFELYNNSVQNGSPESPQGTWDTYPEPKKEDRLLK
NRADHRSSPNVANQAQSPGGKPVYPGAPGKITSVSTGNLCPDEEPSPPRPEAYPIPTQTY
PREYFTFPASKSQDRMGPGQPWQNNEPEPLPPMDNHSNNSMAMQRVARSQEELCEMPGGY
PGERLRQEDLMHLQQQQHEAEYQRGGGDHWNHQMSSSVESSTSSQEHLNFSSSSGSRMQG
NHKSGPGRWKTPIAPHSGPVAVSQPSRSDLPPPPPPPPAHYDYEPQPELPLPPPPSITQQ
QAAAAAATADRKKREEQQRWYEKEKARLEEERERKRRDQERKLVQIRNPPGPVMHNNQHG
PLPPAPQHQQMPHQQPPMQVPQPYLPPVQSAQPPPPPQPARPDKLSSLPRQPPQDTVIRD
LLPQQQPRTIERRDLQYITISKEELSASDSLSPDPWKRDAREKLEKQQQLHIVDLLDKEI
QDLQAKPERTAEENDRLRKLMLEWQFQKRLQESKQNEEDEEEEDDEDVDTTLIMQRLEAE
KRARQTAVPAISVLDLLQDEERRRKQQLEEIRKREAEERAKQEEERRWREEEKARRETEE
KRRQEEEYYTRLEAERRRQHEEAERKLLTPDEPGLYRPPLPRDYQPPSPASTPTTNNNSA
PPPPPQRNTSYLKTQVASPDTIYTAKFVSYNDEEEEDEDEEDAGLTGQVKLSATRKSYGD
LPPAPKPQPPPTARKPRPVSDGIFLSNSFQLPAAANANSTALKAGQPPLPPAKPSFIPSA
NSKGFNSYTGNTTGLGSGEIYKDPREKWTKGSPDQENTIGGAPENLTFRERQRLFSQGKE
VSNKVKASRKLMELENELNIKQ
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagccgagaggaggagcggcggaaactcgccgacatcatcaaccactggaac
gccaaccggctcgacctgttcgagatcagccaaccgactgaggacttagagttccatggc
gtgatgcgcttttacttccaggaccgggtggcggggaactttgctacaaaatgtatccga
gtgtcaagcacggcgaccacgcaggatgtaatcgagacgctggcggaaaagttcagaccg
gatatgaggatgctgtcttctcccaaatactccctctatgaggtccacgtcagtggcgaa
gagaggaaactggacttggatgagaaacctctggtcgtacaattgaactggaacaaagac
gacagagaaggccgcttcgttctcaagaacgagaacgacatcattcccaagagaacattg
ataaatggccctgagaaagagaaggagggggtgatccagaacttcaaaagaacactatcc
aagaaggagaagaagaaagagaagaagagggagaaggaagccttttccagaattccagat
ggagatgatcacgcgctgaaccgcgaggatggagagaactctagattggctgccgaggtg
tataaagacatgccggagaccagtttcacacggaccatttctaaccccgaggttgtgatg
aagaggagacgacagcagaagctggaaaagaggatgcaggaattccgcagcggagacggt
cgaccggactcaggagggactctgaggatctacgccgatagtctgaagcccaacatcccc
tacaagaccatcctgctctcaactactgacatggctgactttgctgtggccgaggctttg
gagaaatacgggctggagaaggaaaatcctagagattactgcatcgcacaggtgattcat
gcaaatgataaaccagtgaaggagaccatattagatgacacagattgtcctctgcagatc
ctcagagactggacaagcgataaagaggctttagtattccaactgaagaagcgtcctcca
gactatgcaccaaggaaaggacgtaagcccgacaacaggatggggccgcctcacggatcc
attcctcccgagaaactgccctacctggtcgaactgagcccaggacgagggagtcactat
gcctactactaccgccatcatgaagatgggtcagactccagggataaacccaaactctac
agactccagcacagcgtcaccgaggtcggatctgaccagggtgaagacggaaacatccag
ctgtttgggcctgggattttgcctcaccactgtgatctaatgcatgaggacgggctggtg
accgtgacccctgtcagtttggatgctgagacattcgtggatggacagcggatctcagac
actacgattttgcgcagcggtgtgactgtccagttcggagccactcatgttttcaaattt
gtggaccccagctatgaccacagcatgtccaagagagacccagggcccatgatgaaggcc
cgacacaaatcaggaagtgtcccagagacgacctttgaccttcacggggacgttcatagt
ggctccgctctccctacaagcaagagctcagggaagctggagatggagcgttcgggaaac
agcgaaagaggcctggtgaaacccatgattagaggagaacagcaggactttaacaaacat
gatggaaggtcccaggacggcccagaactcattctgccggccagcatcgagttcagggaa
aactctgaggatgccttcttgtccgccatcattaactacaccaacagctcaacagttcac
ttcaagctgtctcccacctatgtgctgtacatgacctgccgctacgtcatgtccagccaa
taccggcccgacatcagcccctctgaacgaacgcacaaggtcatcgccattgtcaacaag
atggtgagcatgatggaaggagttatccaggagattgctgaaggtgatcagaaacagaag
aacatcgccggggctctggccttttggatggctaacgcctcagagctgttgaacttcatc
aagcaggacaaggatctcagtcgcatcacgctggatgcacaggatgtcctcgctcacctg
gttcagatggcttttaagtacctggtgcactgcctgcagtcggatctgaataactacatg
ccagctttcctggaagatccagatgaacagaaccctcagaggcccaagatagaggatgtt
ctgcacacgttaacaggcgccatgtctcttctgcggcggtgccgtgtcaacgcggctctc
accattcagctcttctctcagctcttccactttgttaacatgtggctctttaacaagctg
gttacggaggccgactcaggcctgtgctcacactactggggcgccatcctgcgacagcag
ctcagccatatcgaggcgtgggctgagaaacagggtttggagctggctgcagactgccac
cttagtcgcatagtccaggcaacgactctcctcactatggacaaatactccatgcaagat
gtgcagaacatcaacaacacctgcttcaagctcaattctctgcagctcaacgctctgctg
agcaactaccactgtgctcctgatgagccctacattcctcctgagctgattgatcatgtg
gtggctgtggctgagaacacggcggacgaactggcccgaagcgatgggcgggaagtacag
ctggaggaggaccctgacctgcagctgcctttcctactgcccgaggatggctactcgtgc
gacgtggtgcggaacattcccaacggattccaggagttcctagagccgctttgccagaga
ggtttctgtcgattgacacctcatccacgctctccgggaacttggaccatctattttgaa
ggagccgattgcgacagtcacttctcagctgacacgtcagaactgccaatgcggaaggaa
ccggaagttgtgacggtgactttgaagaaacacaatgggatgggcctcagtattgtggcg
gccaagggtgccggacaggacaaacttggtatttacatcaagtctgttgtcaaaggaggt
gcggcagacattgatgggcgtctggctgctggagaccagttgctcagcgtggatggaaga
agtctggtcggcctctcgcaggaaagggcggcggaattgatgacacgaaccggttcggtt
gtaacgctcgaggtggccaaacagggagccatttaccacggtctggccacgcttctcagc
cagccgtcccccatgatgccccgtgcatcagatcgtggacgtggagacaagggaaagctg
agaccaaagagcgagggctttgagctctacaacaactctgtgcagaacggctcgcctgag
agcccccaaggcacatgggacacctatcctgaaccaaagaaggaggacaggttgttgaag
aaccgcgcagaccaccgctccagcccgaatgtggctaaccaggctcagagtccaggcggg
aagcctgtttacccaggagctccaggaaagattacttctgtctcgacgggtaacctctgc
cctgatgaggagccctctccaccccgtccagaggcgtacccgatccctactcagacatac
ccaagggaatacttcaccttcccagcctccaaatctcaggataggatgggccccggccag
ccctggcaaaacaacgaaccggagcctctcccgcctatggataaccactctaacaacagc
atggctatgcagagggttgctcgctctcaagaggagctgtgcgagatgccaggcgggtac
ccaggtgaacgcctgcgccaggaagacctgatgcacctgcaacagcagcagcatgaggca
gagtaccagcgaggcggtggtgatcactggaaccaccagatgtcctcctcggtggagtcc
agcacctccagccaagagcacctcaacttctcctcgtcttccggctccaggatgcaaggc
aaccacaagagtggacctggccgctggaagaccccgatagcaccccactctggccctgtg
gccgtctcccaaccttcccgttcagatcttccaccccctcctcctcctccacctgcgcac
tatgactatgagccgcaacccgaattaccgcttcctccaccgccctccattacgcagcaa
caggctgcagctgctgcagccacagccgaccgcaagaaacgtgaggagcaacagcgctgg
tatgaaaaagaaaaggccaggcttgaagaggagcgagagaggaagagaagagaccaggag
aggaaactggtgcagattcgcaaccctcccggccctgtaatgcacaacaaccagcacggc
ccgctgccgcccgccccacagcaccaacagatgccccatcagcagccccccatgcaggtt
ccccaaccataccttcctccagtccagtcagcccaaccaccgccgccaccacaacccgct
cgacccgacaagctttccagccttccccgccagcccccacaagacacggtaattcgtgac
ctcttgccccagcagcagccacgcaccatcgaaagacgtgacctgcaatacatcaccatc
agcaaagaggagctgtccgctagtgacagcctatcgcccgacccctggaagagggacgcc
cgtgagaaactagagaagcagcagcagcttcacatcgtagacctcctggataaggagatc
caggaccttcaggccaaacccgaacgcacagctgaggagaacgaccgtctgcgcaaactc
atgctggagtggcagttccagaagagactgcaggagtccaagcagaacgaggaggacgag
gaggaggaggatgacgaagatgtagacaccacgctgattatgcagagactggaggctgag
aagagagcacggcagactgctgttccagcaatctctgtactagacttgctacaggacgag
gagcgacgacggaaacagcagctggaggaaatccgtaagcgtgaggcagaagagcgagcc
aaacaggaggaggagagacgctggagagaagaggagaaagccagacgagagaccgaggag
aagagaagacaggaggaagagtactacacccgcctggaggcagagcggcgccggcagcac
gaggaagccgagcgcaagctgctgacgccagacgagcctggtctgtacagaccccccctt
ccccgggactaccagcccccttctcccgcaagcacccccaccactaacaacaacagcgcc
cctccgcccccacctcagagaaacacctcctacctcaaaacccaggtcgcctcccccgac
accatatacactgccaagtttgtctcatacaatgacgaggaggaggaggatgaggatgag
gaggacgcgggcctaacaggtcaggttaagctctcggccacccggaagtcctacggtgac
cttccgcccgccccaaagccccagccgccgccaactgcgcgcaagccccgtcccgtctca
gatggcatctttctgtccaactcattccagctgcccgcagcggccaatgccaacagtact
gctctcaaggcagggcagccccctctccctcccgccaaacccagcttcatcccatcggcc
aactcgaaaggatttaattcatacactggaaacacaacaggactaggatcaggagagatt
tacaaggacccgcgagagaagtggacgaaaggcagccccgatcaggagaacacaataggc
ggagctccagaaaacctgacatttagggagcgccagagactcttctcacagggaaaggaa
gtgtcgaataaagtgaaagcatcccggaagctcatggaactggagaacgaactcaacata
aagcagtag
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integrated database retrieval system
