Garra rufa (doctor fish): 141284281
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Entry
141284281 CDS
T11039
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141284281 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141284281 (dhx16)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141284281 (dhx16)
Spliceosome [BR:
grf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141284281 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
141284281 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
PWI
Flavi_DEAD
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
141284281
NCBI-ProteinID:
XP_073673390
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All DBs
Position
14:11814814..11837314
Genome browser
AA seq
1051 aa
AA seq
DB search
MANLEQWVSDQLHDILGLSDRYVAQFMIGLVRKSSGPQDFVDRLQQTGTIDIDQRITAFA
HELYDKAPKKHVAEKPARAVERHVMEMERKNRTYTLLEDSESDGETVKEKGKEKKSKDRD
KGKKRKHLRQKRDESPSSGEDDGEKSTKVTDEPKKAAEEEEEWEKEERERLQDLEERDAF
AERMKQKDKDKTRHILERNDKKAYEEAQKRLKMAEEDQKKMLPELRKQSRWQYLTKREEE
KIDDLEAEIRDEEYLFSTQNLTDRERKELEYKRQVRDLARDYKKAGAKEKEERKNRYYMP
EEIRSKSIPQKDMDLEFEETPREGGGEQGRWEEARVATATLQFGAKAERERRKKEEEDKY
QLILEEEEMINFVSTAITMKGTLSEKESEPELSQAEKQKQSIQEVRRSLPIFPYREDLLA
AIREHQILVIEGETGSGKTTQIPQYLLEDGYSEGGMKIGCTQPRRVAAMSVSARVAQEMS
VKLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLHTD
ILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYYTKAPEAD
YLEACVVSVLQIHVTQPVGDVLVFLTGQEEIEACCELLQERCRRLGSKISELLVLPIYAN
LPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLI
VTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSL
GINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILA
SEHYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHMVLLNVYTQWVE
SGYSTQWCFENFIQFRSMKRARDVRDQLEGLMDRIEVELCSCSDDTVPIRKAVTAGYFYN
TARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWMIYHELVFTTKEFMRQVIEIESGWLLE
VAPHYYKNKELEDSSSKKMPRKQGKAREELG
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggaacagtgggttagtgaccagctccatgacatcctgggtttgagtgac
cgatatgtggcccagttcatgatcggtctggtgcggaagtcttctggacctcaggacttt
gtggatcggcttcagcaaaccggaaccattgatattgatcaaagaataacagcatttgca
catgagctctacgacaaagctcccaaaaaacatgtggctgaaaaacctgcccgggcggtg
gaacggcatgttatggaaatggagagaaagaacagaacctacactcttctggaggacagt
gagagtgatggagagacggtaaaagaaaaaggaaaagagaagaaaagcaaagatcgggac
aaaggaaagaagagaaaacacctcagacagaaacgagacgagagtccatcgtccggtgaa
gatgatggggaaaaaagcactaaagtcacggacgaacctaaaaaagctgctgaagaggag
gaagaatgggagaaagaagagagagagcgacttcaagatctggaggagagggatgcattt
gctgaacgaatgaaacagaaagacaaagacaagacaagacacatacttgagagaaatgac
aaaaaggcttatgaggaagctcagaaaagactcaaaatggctgaagaggatcaaaagaaa
atgcttccagagttaaggaaacagtcacgttggcagtatctgaccaaaagagaggaggag
aagattgatgacctcgaggctgaaattagggatgaggaatacctcttctccactcagaac
ctcacagatcgggaaaggaaagagctagagtacaagcggcaggtcagagacctggcccga
gactacaagaaagcaggagcgaaagaaaaagaggagagaaagaacagatactacatgcca
gaggagataagaagcaaatccattcctcaaaaagacatggacctggagtttgaagagact
cctagagagggaggtggggagcagggccgctgggaggaggcgagagtggccaccgccacc
ctgcagtttggggccaaagcagagcgggaacgccggaaaaaagaggaggaggacaagtac
cagctcattttagaggaagaggagatgatcaactttgtcagcacggccattactatgaaa
ggaacactgtcagaaaaggaaagtgaacctgagttatctcaggctgagaagcagaagcaa
tccatccaggaagtgagacgcagccttcccatctttccttacagagaagatcttctcgct
gccatcagggaacaccagatcttggtcatagagggtgaaaccggatccggcaagaccaca
cagatccctcagtacctcctggaagatggttattctgaaggaggaatgaagattggctgc
actcaacctcgaagagtggctgccatgtctgtatcagccagagtcgcacaagaaatgagt
gtcaaactaggaaatgaggtgggctacagcatccgttttgaagactgtacgtcagaacgc
accatcttgaagtacatgactgatggcatgttgctcagagagtttcttacagagcctgac
ctcgccagctatagtgtggtcatcatcgatgaggcccacgagcgaacgttacacacagac
attctcttcggtctaattaaagacattgcacgtttccgccctgatctgaaagttctggtg
gccagtgccactctagacacggagcgtttctcctgcttctttgatgatgcacccgtattt
aggattccaggtcgtaggtttcccgtggacatctactacacaaaggctccagaggccgac
tacctggaagcatgtgtcgtgtcagtgctacagatccatgtcactcagccagtgggagac
gtactggtcttcctcacaggacaggaggagatcgaggcatgctgtgaacttctgcaggag
agatgtaggagactaggctcaaagatatctgaacttcttgttctgcctatttatgccaac
ttgccctcagacatgcaggcaaaaatctttaatcccactccacctggagcacgcaaggtt
gtggtggccacaaatatcgcagagacgtctctcaccatcgacggcatcatctatgtgatc
gatccaggtttctgcaaacaaaagagctacaatgcaagaacaggaatggaatctctcatc
gtcactccctgttcacgagcctcagccaatcagagagcaggtcgtgcaggaagagtggct
gctgggaaatgttttaggctgtacaccgcctgggcctttaaacacgagatggaggagacc
accgtccccgagatccagagaacaaacctgggcaatgtggttctgctgctcaaaagtctc
ggcataaatgacctgattcattttgacttcatggatcctcctcctcacgaaacgctggtg
ttggcgctggagcagctttatgccttgggcgcccttaaccacctcggtgaactcactaag
ctcggccgaaggatggctgaacttcctgtggaccccatgctgagtaaaatgattctggct
tctgaacattataagtgctctgaggaggttctgaccatcgcggccatgctgtcagtgaac
aactccatcttttaccggcccaaagacaaagtggttcatgccgacaacgctcggatgaac
tttgtggtaccaggaggagatcacatggtgctgctcaatgtatatacacagtgggtagag
agcggttactccactcaatggtgctttgagaacttcatccagtttcgctccatgaagaga
gctcgagatgtccgtgatcagctggaggggttgatggacaggattgaagtggaactgtgc
agctgtagcgatgacactgtgcccattcgcaaggcggtgactgcgggatatttctataac
acggcacgcttgagtaaagggggttataaaacagttaaacaccagcagactgtttatgtc
catcccaacagctcactctttgaggaacagccacgttggatgatctaccatgagctggtc
ttcaccaccaaagagttcatgagacaggtgatagagattgaaagtggctggctgttggaa
gtggctcctcattattacaagaacaaagaactggaggacagcagcagtaagaagatgccc
cgcaaacaaggcaaagcccgtgaagagctgggctga
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integrated database retrieval system
