Garra rufa (doctor fish): 141284618
Help
Entry
141284618 CDS
T11039
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
grf Garra rufa (doctor fish)
Pathway
grf04137
Mitophagy - animal
grf04140
Autophagy - animal
grf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141284618 (hif1al)
04137 Mitophagy - animal
141284618 (hif1al)
04148 Efferocytosis
141284618 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141284618 (hif1al)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
141284618 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
141284618
NCBI-ProteinID:
XP_073673711
LinkDB
All DBs
Position
14:19346314..19365539
Genome browser
AA seq
631 aa
AA seq
DB search
MVNSAMKRPSLEQRKVRSRDAARCRRSQETEVFYELAHSLPLPRRIASHLDKAAIMRVAL
SYLRMNRLIHSAVPTKTQTEETENPTDAFYQQALAGFILVMTEEGDMVFLSESVSKYIGI
TQLELLGQSVYEFVHPCDQEELRDILATRPGVSKKKTEKSMEHNFFLRMKSTLTHTGRTV
NIKSATWKVLHCTGHMQTFSGDDEKSPPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHN
MDLSFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFDHVTRSLHILFSKGQVCTSHYRF
LAKNGGFVWIETQATVLYNNRTSQPEAVVCLNFILSGIEEADVVFSLEQTCEKPKPRAEK
LSVLNEENDSDMEDECSTAKLFLKMKENPEELLQLAPHSGDTVISLTEGVELSFCCPPSP
NSVPECPQDFCTPELRQLLSPIFDRPNKSPPAASPAEELPMEMEGVEKFFALKPEESVTL
KGQSEAMDELDLDMLAPYISMDDDFQLTFLPQSEMAAPSDMLTNNSRKRCLEDEEEDDIP
VLAAKWEKKSMSSSIEEQLLLSHTLLKSLSDDGSEEFEPPPQKRSQLLTDRDPLLGGAQA
LCDTAALMRDTFLSRPPDLMRPVAETMPSLT
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactcagcgatgaaaaggccgagtctggagcagcggaaggtgcggtcacgtgat
gcggcacgctgtaggaggagtcaggagactgaggtcttttacgaactggcccattcacta
ccccttccacgacgtatcgcctcccacctggacaaagctgccatcatgagggtggcactg
agctatctgcgcatgaaccgtttgatccattcagcggtgccaaccaaaacacagactgag
gaaactgagaatcccactgatgccttttatcagcaggcactggctggctttattctggtg
atgactgaggaaggcgacatggtcttcctctcagaaagtgtcagcaaatacattggcata
acacagctggagctgcttggccaaagcgtgtatgaatttgttcatccctgtgaccaagaa
gaattacgagatatccttgccacaagacctggtgtttcaaagaaaaagacagagaagtca
atggagcataatttttttcttcggatgaagagcacactcacccacaccggaagaactgtt
aatatcaagtctgcgacctggaaggtccttcattgcacaggacacatgcagacattcagt
ggcgatgatgagaaatcaccccctgctggcagcttcctgactttgctatgcgaacccatt
ccccacccctccagcgttgaattcccacttgatagcagcactttcctcacacgccataac
atggacttgagtttcacacaatgcgatggacgagtcactgagcttgttggataccaaccc
gatgatctgattggccggtctgcctatgagttttaccacgcccttgattttgatcatgtg
accaggagtttacacatcctgttctccaagggccaggtgtgcaccagtcattaccgcttc
ctggctaagaatggaggatttgtctggattgagactcaagccactgtcctctacaataac
agaacatctcaacccgaggctgtggtctgcctcaactttattctcagtggtatagaagag
gcggatgttgtgttctcattagaacagacctgtgagaaaccaaagcccagagctgagaag
ctgagcgtgctaaatgaggagaacgactctgacatggaggatgagtgtagcactgccaaa
ctcttccttaagatgaaggagaacccagaggagttgctgcagctggcacctcactctgga
gacactgtcatttccctaacagagggtgtggagttgtccttctgctgtccgcctagtccc
aactctgtcccagaatgccctcaggacttctgtacgcctgaactccgccagctcctttct
ccaatattcgacaggcccaacaaatctccacctgctgcgagccctgctgaagagctgccc
atggagatggaaggggtggagaagttcttcgccctcaaaccggaggagagcgtaactctg
aaaggacagtcagaggctatggatgagcttgatttggacatgttggctccatatatctcc
atggatgatgactttcagttgaccttcttgccccagagtgaaatggcagcaccttcagat
atgctgaccaacaattcaaggaaacgatgtttggaagatgaagaggaagatgacattcct
gttctggctgccaaatgggagaagaaatcgatgagcagctccatagaggaacagcttctg
ctcagccacacattactgaaaagcttgtcagacgatggttcggaagagtttgaaccgcca
cctcaaaagcgaagccagcttttgaccgacagggacccgttgctgggcggagcgcaggcg
ttgtgtgatacagcagctctcatgagggacaccttcctgtcacgcccgcctgacttaatg
aggcctgttgctgaaacaatgccgtcccttacttga
DBGET
integrated database retrieval system
