Garra rufa (doctor fish): 141285152
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Entry
141285152 CDS
T11039
Symbol
col4a3
Name
(RefSeq) uncharacterized protein col4a3
KO
K06237
collagen type IV alpha
Organism
grf Garra rufa (doctor fish)
Pathway
grf04382
Cornified envelope formation
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
grf04518
Integrin signaling
grf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141285152 (col4a3)
04518 Integrin signaling
141285152 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141285152 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141285152 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141285152 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141285152 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141285152 (col4a3)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141285152 (col4a3)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141285152 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141285152
NCBI-ProteinID:
XP_073674303
LinkDB
All DBs
Position
14:complement(10977670..11015485)
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AA seq
1652 aa
AA seq
DB search
MDSCLILRATLLGMLLLGLLTPAQTKGGCVCNEKSGCHCQGLKGQKGDMGIPGSPGAVGV
QGHRGKEGPPGIRGDEGNIGYPGLPGPKGSRGLSGTPGYPGPPGLPGFPGKEGPRGPHGL
PGCNGTKGEPGPPGLIGRMGAPGWQGRPGTQGQKGDSYYFPPPEQVKGRRGFPGRDGDKG
PPGLPGLSGPVGPEGPRGSQGIQGMPGTQGEKGIEGRSMGIPGPIGQKGVTGPPGIPGER
GTKLFVSGPIEPKGDTGDPGDLGCLGPTGFRGRPGPKGQPGQIGEPGGPGKPGKEGLQGE
SGLKGIPGDQGFPGATGIEGDMGQKGDRGASGLPGELIVIDNEIKGKKGSPGRPGPPGLQ
GSEGFIGITGYTGPPGTGIPGPVGKPGPPGFRGVKGDKGDSAPNSTGPKGYDGPPGERGP
PGDPGPPGISKFNTRQGPKGSTGDKGPIGPQGLRGGNGIPGDQGELCRLCATSAADPGSP
GPPGYSGDPGESGRGGLQGNKGYQGVKGPEGPPGPPGSLGRPGFPGPPGPKGDLGMRSEI
GDKGQKGNCGVEGLLGINGQDGRPGTPGFKGPPGVKGNPSPPGPKGNQGEPGICGEPGCP
GPMGSQGSMGVGQSGPPGEKGSLGIVGRQGNPGEPGEKGSPGPVQMTPGDPGEPGLPGSP
GQPGLPGNEGNPGVQGFPGLSGFKGEKGPSMPGPRGFTGPKGDKGVKGNVGTSGYGSVGR
PGPPGPPGSPGPKGELTFGSPGPKGRQGFPGDEGSLGPPGISGPPGLSGCPGQKGRDGPP
GDSGVRGSDGLPGVAGVPGYCTPGAKGDEGPVGIRGLDGPTGLPGLRGPQGEIGPPGQGL
PGITGVIGIPGKIGDAGLIGIQGPKGFQGRDGSPGFPGTRGDQGSPGRVGPPGIDGNPGP
PGFQGPKGLMARNGGPGDVGKPGNSGDPGACGLKGLPSNVMSPGDPGEPGLPGLLGLRGS
KGELGLPGNFGQCGKNGVPGRPGPPGPPGDPGQKGLPGNQGLDGNFGDPGVMGFPGVKGL
KGLPGVRGETGTPGFPGPNGPKGIKGEPSPSGPGRPGEPGQKGEPGFPGSRGEKGDKGIC
GTSGPPGFSGSSGERGETGVPGVPGPPGAPGDEGLDGRPGPPGCEGPCGPPGFSGSAGDP
GPQGLRGDQGRDGIPGPAGDKGDRGPPAIGDRGPRGIKGEKGTKGCSGPPGPCGPPGPYG
LAGDPGPSGKPGEMGPRGITGPPGVCISGPKGEQGLIGLPGLPGLRGPRGPPGNPGPGLK
GDKGHIGPQGLVGQPGCAGDRGVPGLQGRDGDPGLKGPKGNMGPLGCVGPVGQKGGCGPA
GAPGLKGCKGTPGTKGPKGCDVVAQVMSLPGDTGLPGKVGEKGDPGEPGTQGLQGFIGTK
GQKGRSGADGGFGSRGRPGPKGDTGPKGTKGLRGVSGREGPKGIRGPPGKKDGFLFTKHS
QKTTIPDCPRGSNPVYSGYSLLFINGNNRGHGQDLGTVGSCLQMFSTMPFLVCNPNETCQ
YAFRNDYSYWLSTDTPMPATMELISGGSLVNYISRCSVCEAPTNVIAVHSQTMEIPQCPR
GWLSLWKGYSFVMQTGAGAEGSGQPLVSPGSCLEEFRKIPFIECHGSGNCNFFPDSYSFW
LASLDPERMFSIPVHQTTRKQDISRCRVCMKQ
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atggattcctgcctaatattgcgagcgacacttttggggatgctgttgctgggacttctt
actccggctcaaactaaaggggggtgtgtttgcaatgagaaatcagggtgccactgtcaa
ggactgaaaggacaaaagggtgatatggggatccctggctctcctggtgcagtgggagtt
caggggcatcgaggaaaagaaggccctcctggaattcgtggtgacgaaggaaatattgga
tatccaggcctacctggacctaaaggttctaggggactttcagggacaccaggataccct
ggcccaccaggactaccgggtttccctgggaaagaggggccaagggggcctcatggtctc
ccaggatgcaatggaacaaagggtgagcctggtcccccaggcttaatagggcggatggga
gctcctgggtggcagggaaggccaggaacccaaggacagaagggagatagctattacttc
ccaccccctgaacaagtgaaaggacgtcgtggttttccaggcagagatggagataagggg
cctccgggattgccagggttatcaggaccagttggaccagaggggcctagagggtcacaa
ggaatacaaggcatgcctggaacgcaaggagagaagggtatagagggtcgaagcatggga
ataccaggacccataggtcaaaagggggtgacgggaccacctggtataccaggagaaaga
ggcacaaagttatttgtatcaggaccaatagagcctaagggtgacactggggatcctgga
gaccttggatgtcttggcccgactggttttcgtggtcgtcctggtcctaaggggcagcca
gggcaaatcggggagcctgggggtccgggtaaacccggaaaagaggggctacaaggagag
tcaggtcttaagggaatccctggagaccaaggatttccaggagctactggaatagaagga
gatatgggtcaaaagggtgaccgtggtgcctctggactccctggagagttgattgtaata
gataacgagatcaaaggtaaaaaaggttctcctgggcgtcccggacctcctggtctacag
ggtagtgaaggtttcattggtattactggatatacaggtcctccagggactggcatacca
ggacctgttggaaaaccaggtcccccagggtttagaggtgtgaaaggggataaaggagat
tctgcacctaacagcacaggacccaaaggatatgatgggccaccgggggaacgaggaccc
cctggtgaccccggacctccaggaatttcaaaattcaacacccgccaggggccaaaaggg
tccactggtgataaaggccctataggccctcagggtctgcgtggaggtaatggaatacca
ggtgatcaaggagagctttgcagactgtgtgctacttctgctgctgacccaggatctcca
ggaccacctggatattcaggcgatccaggagagtcaggtcgtggtggacttcaaggtaat
aaaggataccaaggcgtcaaaggtccagagggtccacctggtcctccgggttccttaggt
cgtccaggatttccagggcctccagggcccaaaggagacctagggatgaggtctgagatt
ggggataaaggccagaaaggaaactgtggtgtagaaggactactggggataaatgggcaa
gatggcaggccgggcacccctggcttcaaaggaccaccaggagtaaaaggaaatccaagt
cctccagggcctaagggcaaccaaggagaaccagggatttgtggggaacctggctgccca
ggtccaatgggcagccaagggtcaatgggtgttgggcaatcaggaccacctggagagaaa
ggcagtttgggaatagtgggccggcaaggaaatcctggggaaccaggtgagaaaggttct
ccaggaccagtacaaatgacaccaggcgacccaggtgagcctggactgcctggttcacct
ggtcaaccaggacttccaggtaatgaaggtaatccaggagttcaaggattcccaggactg
tctgggtttaaaggagaaaaaggaccatcaatgccaggacctcgtggatttactggtccc
aaaggggataagggtgtaaaggggaatgtaggtacgtctggttatggaagtgtaggccgt
cctggacccccaggaccaccaggaagtccaggtccaaagggtgaactaacatttggctcc
ccggggcccaagggtcggcagggctttccaggagatgaagggagccttgggccgccagga
atttctggcccccctggattatcaggatgtccaggtcaaaaaggaagggatggaccacca
ggagacagtggtgtgcggggttctgatggtttgcctggagtggctggggttcctggatac
tgtacgccaggagccaaaggtgatgaagggcccgtaggcattagagggctagatggaccc
actgggctgccagggctgagggggccacaaggtgaaattggaccacctggacagggttta
cctggtataacaggtgtgattggaatacctgggaaaattggagatgctggtttgattggt
atccaggggccaaaaggtttccaaggtcgggatggttcaccaggctttccaggtacacgg
ggagatcagggaagtcctggaagggttggtccacctggaatagatggaaatcctggacca
ccgggattccagggacccaaaggtttaatggctaggaatggagggccaggtgacgtagga
aaacctgggaattcaggagaccctggggcctgtggtctcaagggactgccgtcaaacgtt
atgagtccaggggatcccggtgaacctggcctaccaggtcttcttggtctacgtggcagt
aaaggggaattaggactcccaggcaattttggacaatgtgggaagaatggagttccaggc
agacctggtccaccaggccctcctggtgaccctggccagaagggacttcctggcaatcag
ggtcttgatggaaactttggggatccaggagttatggggtttccaggagtgaaaggtctt
aaaggtttacctggtgttcgtggggagactgggactcctggtttcccaggaccaaatgga
ccaaaggggatcaaaggtgaacccagcccttctgggccagggcgcccaggagaacctggt
caaaagggtgagccaggatttccagggagtagaggtgaaaagggtgacaagggtatatgt
gggacgagcggaccaccaggtttttcagggtcttctggtgaaagaggcgaaactggagta
ccaggagttccaggacccccaggagctcctggtgatgaaggtttagatgggcgtccaggt
ccacctggatgtgaagggccctgtggtccaccaggtttttcgggttcagctggagatcct
gggcctcaaggactacgtggagaccaaggcagggatggcattccaggaccagcaggggat
aagggagacagagggcccccggcaattggagatcgtggcccacgtggcatcaagggtgag
aaaggtacaaaaggctgttctggacccccagggccatgtggaccaccaggaccctacggt
ctagctggagatcctgggccttcgggcaaacctggggaaatggggccacgcggaattaca
ggtccacctggtgtctgtatcagtggtccaaaaggggagcaaggacttattggattacct
ggcctaccaggacttagaggaccacgtgggcctcctggcaacccaggtccaggcctaaaa
ggagataaaggacacattgggccccaggggcttgttgggcaacctggttgtgctggtgac
agaggagttccagggttgcaaggcagagatggagatcctggtttaaagggtccaaaagga
aatatggggccattgggttgtgttgggccagtcggccaaaaaggagggtgtggtccagct
ggggctcctggattaaaaggttgcaaaggaactcctggaaccaaagggcctaaagggtgt
gatgttgtggctcaggtcatgtctctcccaggagacactggtcttcctggaaaagtcggg
gaaaaaggagatccaggagaaccaggaactcaagggttacaaggtttcataggaacaaag
ggtcaaaagggcagaagcggtgcagatggaggttttggatccagggggaggcctggacca
aaaggagacactggcccaaaaggaactaaaggtttacgtggtgtgtcaggcagagagggt
cccaagggtatacgaggtccacctggtaaaaaggacgggttcctttttaccaagcatagt
cagaaaacaactataccagactgtcctcgtggatcaaatcctgtgtactctggatattcg
cttctcttcatcaacggcaataaccgcggacatggacaagacctaggaactgtgggaagc
tgtttgcagatgttctccaccatgcctttcctggtgtgcaatcccaacgagacttgtcag
tacgcctttcgaaatgattactcctattggctgtctacagacacgccgatgcctgccacc
atggaattgatatctggtggttcgttggttaattatatcagcaggtgttcagtatgtgag
gcaccaactaatgtaatagcagtccacagccagaccatggaaatcccacagtgccctagg
ggatggctttcactatggaaaggttactcctttgtaatgcaaacgggtgctggtgctgaa
ggttctgggcagccactggtctctcctggatcctgtctcgaagaattccggaagattcca
ttcatagagtgtcatggtagtggcaactgtaacttctttcctgattcctacagcttctgg
cttgcatcacttgatcctgaaagaatgttcagtattccagtccaccagacaacaagaaag
caagacatcagccgttgtcgggtctgtatgaagcagtag
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