Garra rufa (doctor fish): 141286601
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Entry
141286601 CDS
T11039
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
grf Garra rufa (doctor fish)
Pathway
grf04142
Lysosome
grf04144
Endocytosis
grf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
141286601 (cltcl1)
04142 Lysosome
141286601 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
141286601 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141286601 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141286601 (cltcl1)
Membrane trafficking [BR:
grf04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
141286601 (cltcl1)
Exosome [BR:
grf04147
]
Exosomal proteins
Proteins found in most exosomes
141286601 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_Vps41
TPR_COPA_B
HEAT_Nup120
LVIVD
ATP-synt
TPR_Vps8
Motif
Other DBs
NCBI-GeneID:
141286601
NCBI-ProteinID:
XP_073674750
LinkDB
All DBs
Position
15:42096379..42176828
Genome browser
AA seq
1683 aa
AA seq
DB search
MAQILPIRFQEHLQLQSLGVSPASISFSCLTMESDRFICIREKVGDQNQVVIVDLSDPTN
PIRRPITADSAIMNPASKVIALKAARTLQIFNMEMKSKVKAHTMTDEVLFWKWISVNTIA
LVTDMAAYHWSMEGDSQPIKMFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLFSVDRKVSQPIEGHAAAFGNYKLEGNPNTSTLFCFSVRGQSGGKLHIIEVGQPQAGN
QPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYFHMYDLESGVCIYMNRISA
ETIFVTAAHESTSGIIGVNKKGQVLSVCVEEENVVNYVTNVLQNPELALRLALRSDLPGA
EELLTQKFNTLFSQGSYTEAAKVAASAPKGVLRTAETIRRFQAVPAQGGQPSPLLQYFGV
LLDRGQLNKLESVELCRPVLQQGRTQLLEKWLKGEKLECSEELGDLVKAADVTLALSVYL
RANVPAKVIQCFAETGQFQKIVLYAKKMGFSPDWVMLLRSVMRSGPDQGLQFAQMLVQDE
EPLVNISQVVDVFMEGNLVQQCTSFLLDALKNNRPEEGPLQTRLLEMNLIHAPQVADAIL
GNQMFTHYERPHIAQLCEKAGLLQRALEHYSDPYDIKRAIVHTHLLNPEWLVNFFGSLSV
GDSVECLRAMLAANLRQNLQLSVQVATKYHEQLGTQTLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERVCRESNCYNAERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDTIKNLILAVRGDF
STDQLVEEVEKRNRLKLLLSWLESRVQEGCEEPATHNALAKIYIDSNNSPERFLRENLHY
DSVIVGRYCEKRDPHLAFVAYERGQCDLELIQVCNENSLYKSESRYLVRRKDPDLWAQVL
EETNPYRRPLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLENSIFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELYEEAFSIFKKFDVNTS
AIQVLIEHMRNLDRAYEFAERCADGSVWSRLAQAQLQSGLVKEAIDSYIKAGEPSAYMEV
VDAASRNGNWEDLVKFLQMARKKAREAYVETELIFALAKTNRLTELEDFINGPNNAHIQQ
VGERCYEECMFEAARLLFNNVSNFARLASTLVHLGEFQAAVDSARKASCTRTWKEVCFAC
VDGEEFRLAQISGLHIVTHADELEELINYYQDRGYFEELIVLLEAALGLERAHMGMFTEL
AILYSKYKPQRMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMMT
HPTDAWKDASFKELISKVANVELYYKSLQFYLDYKPLLLNDLLSVLAPRLDHSRAVSYFS
RVNHLRLVKPYLRSVQSHNNRSVNEALNNLLTEEEDYQGLRASIDAYDNFDSIGLAQRLE
THELIEFRRIAAYLYKSNQRWAQSIQLCKKDKLYKDAMQFAAESQDGAQAQDLLRWFVEE
GKRECFAACLFSSYDLLAPDLVLELAWRHGLVDFAMPYFIQVMREYLSKVDEFSRQVKVD
KLQEAEDERADEEQTPEASSIVCGQQLMLSGSQTPVTPQAGFPAYGYTAPGFAPPAYGFN
LQP
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattttaccgatccgcttccaggagcatctgcagctgcagagcctgggagtg
agtccggccagcatcagcttcagctgcctgaccatggagtcagaccgcttcatctgcatc
cgagaaaaggtgggcgatcagaaccaggtggtgattgtggacttgagcgacccgaccaac
cccatccgccggcccatcaccgcagacagcgccatcatgaacccagccagcaaagtcatc
gcactgaaagcggcgcggacgctgcagatctttaacatggagatgaagagtaaagtgaag
gctcacaccatgacggatgaagtcctcttctggaaatggatctcggtcaacaccatcgcc
ctggttacggacatggccgcctatcattggagcatggagggagactctcagccaatcaag
atgttcgatcgtcacgccagcctcgcgggttgccagatcatcaactacagaacggacgag
cagcagaagtggctcctgctcatcgggatatcggcacagcaaaatcgtgtcgtcggcgcc
atgcagttgttctctgtggaccgtaaggtttctcagcccatcgagggtcatgcggctgcg
tttggaaattataaactggagggaaacccaaacacttcaacgctcttctgcttctctgtc
agagggcagtctggaggaaagctgcacatcatcgaggtcggtcagcctcaggccggtaac
cagccgttcactaagaaagcagtggatgtgtttttccctcctgaagcgcagacggacttt
cctgtggccatgcagatcggcacgaagcacggcgtcatctacctcatcactaaatacggt
tattttcacatgtatgatctggagtcaggcgtgtgtatttacatgaaccgcatcagcgct
gaaaccatatttgtcacggccgctcatgagagcacatccgggatcatcggggtcaataag
aaggggcaggtgttgtcggtgtgtgtggaggaggagaacgtagtaaattacgtgactaac
gtgctgcagaatcccgagctggcgttgcgtttggcgttacgcagcgatcttcccggagcc
gaggagctcctgacacaaaagttcaacaccctcttctctcagggcagctacacggaggcg
gctaaagtcgctgcgtcggctcccaagggtgtcttgcgaacggcggagaccatccggcgg
ttccaggcggtcccggctcagggcggccagccgtctccgctgctgcagtatttcggggtt
ctgctggaccgcgggcagctcaataaactggagtcggtggagctgtgcagaccggtgctg
cagcagggacgaacacagctgctggagaaatggctcaagggagagaagctggagtgttca
gaggagttgggtgatctggtgaaggcagctgacgtcactctggccctcagcgtttacctg
cgagcgaatgttcctgctaaagtcatccagtgctttgctgagacggggcagttccagaag
atcgtcctctacgctaagaagatgggattttctccagattgggtgatgctgttgaggagt
gtgatgagatccggtcctgatcagggccttcagttcgctcagatgctggttcaggatgaa
gaaccgctggtcaacatcagccaggtggtggatgtctttatggaggggaatctagtgcag
cagtgtacttcattcctattggacgctctgaagaacaacaggccggaggaggggcctctg
cagacacgcctcctggagatgaacctcattcacgcccctcaggttgcagacgcgatcctg
gggaaccagatgttcactcactatgagcgccctcacatcgctcagctgtgtgagaaagcc
ggtttactacagagagctctggagcattacagcgacccctacgacatcaaacgggccatc
gtacacacacacctgctcaaccctgagtggttggtgaatttctttggctctctgtctgtg
ggcgactccgttgagtgtttaagggcaatgttggccgcaaacctgcgtcaaaacctgcag
ctgagcgttcaggttgccaccaagtaccacgagcagctgggaacgcagacactggtggag
ctgtttgagtcctttaagagttacgagggtctgttttattttctgggctctatcgtgaac
ttcagtcaggaccccgatgtgcacttcaagtacattcaggcggcgtgtaagacgggtcag
atcaaagaggtggagcgcgtctgtcgcgaaagcaactgctacaacgccgagcgtgtcaag
aacttccttaaggaagccaaactcacagatcagcttcctctgattattgtgtgcgaccgc
tttgatttcgtccacgatctcgtgctctacctgtaccgtaacagcctgcagaaatacatt
gagatctacgtacagaaggtcaatcccagccggctgccggtggtgatcgggggtctgctg
gatgtcgactgctccgaggacaccatcaagaatctgatcctggccgtacgaggagatttc
agcactgaccagctggtggaggaagtggaaaaaagaaaccgactgaagctgctgttgtcc
tggctcgaatctcgtgttcaggagggctgtgaggaaccagctacccacaatgcattggca
aagatctacatagacagtaacaacagtcctgagcgttttctccgagaaaacctgcactac
gacagtgtgatcgtgggccgatactgcgagaagagagacccgcacctcgcctttgtggcc
tatgagagaggacagtgtgacctggagctcatacaggtgtgcaatgaaaactccctgtat
aaaagtgagtcacgttatctggtgcggcggaaagatccggatctttgggctcaagttttg
gaggagacaaacccttacagaaggccgctgatagatcaggtggttcagacggctctgcca
gagacgcaggatccagaggaagtgtctgtgacggtgaaggcgtttatgacagctgatctg
cccaatgaactcattgaacttctggagaagatcgttctggagaactccatatttagtgaa
cacaggaacctgcaaaacctgctgatcctgacggccatcaaagcagaccggacgcgggtc
atggagtacatcaaccggctggacaattacgacgctcctgacatcgccaacatcgccatc
agcaacgagctgtacgaagaggccttctccatcttcaagaagttcgacgtcaacacctca
gcgatacaggttctgatcgagcacatgaggaatctggaccgggcgtatgagtttgcagag
cgctgtgccgatggttcagtctggagtcgactggctcaggctcagcttcagagcggtctg
gtcaaagaagccatcgactcgtacatcaaagcaggagagccgtcggcgtacatggaggtg
gtggatgctgccagtagaaacgggaactgggaagatctggtgaagtttcttcaaatggcg
aggaagaaagccagagaggcatatgttgagacagagctcatctttgctctggctaaaaca
aaccgtctgaccgagctggaggactttattaacggccccaacaacgctcacatacagcaa
gttggtgagagatgctatgaagagtgtatgtttgaagccgcccggctgctgtttaataac
gtgtctaatttcgctcgtctggcgtctacactcgtgcatctcggcgagtttcaggcggcc
gttgacagtgcacgaaaggccagctgcacacgcacatggaaagaggtgtgttttgcgtgt
gtggatggagaagagttcaggttagcgcagatctccggccttcacatcgtcactcacgct
gatgaactggaggagctcattaactactatcaggatcgtgggtatttcgaggagctgatc
gtgctgctggaggcggcgttagggctggagcgcgctcacatgggcatgttcactgagctg
gccatcctatactccaaatacaaaccccagaggatgagggaacatctggagctcttctgg
tctcgagttaacatcccgaaggtgttacgagcggccgaacaggcccatctgtgggcggag
cttgtgttcctgtatgataaatatgaggagttcgacaacgccatcataaccatgatgaca
caccccaccgacgcctggaaagacgcttccttcaaagagctcatcagcaaggtggcgaat
gtggagctctattataaatctctgcagttttatttggactataagccgctgctgctcaac
gatctgctgtctgttcttgctcctcgactggatcacagcagagccgtcagctacttcagc
agggtgaatcatttgcggctggttaaaccgtatctcagatcagtgcagagccacaataac
agatctgtgaatgaagcgctcaacaacctgctgacggaggaagaggactatcagggtctg
cgcgcctccattgatgcatacgataacttcgactccatcggtttagctcagagactggag
acacacgagctcatcgagttcagacgcatcgcggcgtatctctacaagagcaaccagcgc
tgggctcaaagcatccagctctgcaagaaagacaaactctacaaggatgcaatgcagttc
gctgctgagtctcaggacggcgctcaggctcaggatctcctgcgctggtttgttgaggag
gggaagcgcgagtgtttcgccgcgtgtcttttcagctcgtatgatcttctggctcctgac
ttggttttagagctggcctggagacacggcctcgtggacttcgccatgccttacttcatt
caggtgatgagggagtacctgagcaaggtggatgagttttccagacaggtgaaggtggat
aagctgcaggaggctgaggacgagagagcagatgaagagcagactcctgaagcctcctcc
atcgtctgcggacaacagctgatgttgagcggcagtcaaacaccagtcactcctcaggcg
ggtttcccagcttacggatacaccgctcccggattcgctcctccggcgtacggcttcaac
cttcagccttga
DBGET
integrated database retrieval system
