Garra rufa (doctor fish): 141286619
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Entry
141286619 CDS
T11039
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141286619 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141286619 (hdac6)
04131 Membrane trafficking [BR:
grf04131
]
141286619 (hdac6)
03036 Chromosome and associated proteins [BR:
grf03036
]
141286619 (hdac6)
Enzymes [BR:
grf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
141286619 (hdac6)
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141286619 (hdac6)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
141286619 (hdac6)
Membrane trafficking [BR:
grf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
141286619 (hdac6)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
141286619 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
141286619
NCBI-ProteinID:
XP_073674770
LinkDB
All DBs
Position
15:37672216..37692796
Genome browser
AA seq
1093 aa
AA seq
DB search
MDPVPDSKGSTRSTRGTPETKRENNNPNHKRNLQEARRKGRMDRSKEEEEMSNELQNLDV
RGKTKATGTGLVYIDAYTRFHCLWDASHPECPARVSTVMETLETEGLLGRCERVEARAVS
EDELLLVHTKEYVELMKSTQKMTEDELKTLADKYDSVYLHPEFFAASCLAAGSVLQLVDK
VMTSQLRNGFSISRPPGHHAHADKMNGYCMFNHLAIAARYAQKQHRVKRVLIVDWDVHHG
QGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKVGMEDG
DYVTAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRASPQCFSILTHMLKGVAQGR
LVMALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGAPSESALQSISKTISALYPFWKS
LQTFEGGPLSNVSPLPAPVCSEVKVSFPITGLVYDQRMMLHHNMWDGHHPELPQRISRIF
CRHEELGLLSRCLRIPARLATEEELALCHSSEHISTIKNTEHMKPRDLHRLGNDYNSIYI
SNESYTCALLAAGSCFNSVQAILTGQARNAVAIVRPPGHHAEKDTACGFCFFNTAALAAR
YAQSITHKSLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPSSEDANYDKV
GQGKGRGYNVNIPWSGGKMGDPEYMAAFHHIVMPIAREFAPELVLVSAGFDAARGDPLGG
YQVTPEGYAQLTHQLMSLAAGRVLVILEGGYNLTSISESMSMCTSILLGDSPPLLDHLPP
PKTSATVTINNVLRAHAPFWSSLRIQIPESLRLALPSPKPKGKRASVGKGKKSPRQSTPA
QSPAQATQHLEQSGLDKLSKDLLSLNLNTSTSYNPSPESVPIGGARRKVKPNPQRDSAGG
EADSPLKLKSEKGRAGEDKHAEVTPVKTETPERTIPESVVTGNSAAVDDQESSVMEAAGG
HATMMSVLECVFGAQATDLDTMYAVDPLPWCPHLESVQPVPAGGIDVFLPCEECGGDTEN
WICLYCYKVLCGRYVNEHMVAHGEVSGHPMVLSFTDLSVWCYTCESYVHNKVLHEAKNAA
HLVKFGEEIPPFS
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgttccagattccaaaggttctactcgatcaacaagaggaacacctgaaacc
aaaagagaaaacaacaatccgaatcacaagaggaatctacaggaggcgcggaggaagggc
agaatggatcggagtaaagaggaggaggagatgagcaatgaactccaaaacttggatgtt
cgtggtaagactaaagcaacaggaacaggtctcgtctacatagacgcctatactcgcttt
cactgcctctgggatgccagtcacccagaatgtccagcaagagtgagcactgtgatggag
actcttgagacagaaggtttgctgggacgctgcgaacgagttgaggccagagctgtgtca
gaagatgagctgttacttgttcatacgaaggagtatgtagagctaatgaaatccacacag
aaaatgacagaggacgagctgaagactcttgctgataaatacgactctgtctacctgcat
cctgaattttttgccgcctcctgtttggcggcaggatcagttctccagctggtggataaa
gtgatgacatcgcagctgcgtaatggattctccatcagcaggcctccaggtcaccatgct
catgcagataaaatgaacggttactgtatgtttaatcatctggccatagcagcacgttac
gcacagaagcagcatagagttaaacgagttctaattgtggattgggacgtgcatcacgga
cagggaatccagtatatttttgaagaggatcccagtgtgctgtatttctcagtgcacaga
tatgaagacggctcattctggccgcatctcaaggagtctgacagcagttcggtgggttca
ggagcaggacagggctacaatatcaacctgccctggaacaaggtagggatggaggatgga
gattatgtcacagctttccagcagctcctgcttcctgtggcatatgagtttcagcctcag
ctggtgttagtagcagctggctttgattctgtgatcggtgacccaaagggtgagatgcga
gcgagtccacagtgcttctccatcctgacccacatgctgaaaggtgtagcacagggtcga
cttgtgatggctcttgagggtggatataacctccagtccacagcagagggggtttgtgct
agtgtgaggtcactgctgggtgacccttgccctcacttgacctctcctggggcgccgagt
gaaagtgcccttcagtccatctcaaagaccatctcagccttgtatccattttggaagagt
cttcagacttttgagggtggtcctttgtccaatgtctctcccctgcccgctccagtgtgt
tcagaagtgaaggtttcctttccaatcactgggctagtttatgaccagagaatgatgctt
catcacaacatgtgggatggtcatcatccagagctccctcagagaatttcacgcatcttt
tgccgacatgaggagttgggcctgttgtcccgttgccttcggatacctgctcgtctggca
acagaagaagagctggcactctgtcacagttctgagcacataagcaccataaagaataca
gagcacatgaaacccagagacctgcaccgactgggaaacgattacaactctatctacatc
agtaatgagagctacacctgtgccctgctggctgctggctcatgttttaactctgtgcag
gccatactcacaggccaggcaagaaatgccgtggccatagtccgtcctcccggtcatcat
gcagagaaagacacagcttgtggtttctgtttctttaatacggccgcgttggctgcacgc
tatgcccagagcatcactcacaaatccctgcgtgtcctcatccttgattgggatgttcac
catggaaatggcacacagcacatctttgaggaggatgacagtgttttgtacatctccctg
catcgctacgaggacgggacgttcttccccagttcggaggatgctaactatgataaggtg
gggcaggggaaaggcagaggatacaatgtcaacatcccctggagtggcggaaagatgggg
gacccagaatacatggcggctttccatcacatagttatgccgatagccagagagtttgcc
ccagagcttgtgctggtgtctgctgggtttgatgcggcacgaggtgatccgttaggaggg
tatcaggtgaccccagagggttacgctcaactgacccatcagttaatgagtctggctgca
ggaagagtgctagtcatactggagggaggatataaccttacctccatctctgagtcgatg
tctatgtgcactagtatcttgctgggagactctcctccacttctagaccatctgcctcct
ccaaagaccagcgccactgtcaccattaacaatgtcctgcgtgcacacgctcccttctgg
agctccctgagaatacagattccagaatcacttcgtttggctttgccatctccaaaacca
aaaggcaagcgggcatcggtaggcaagggcaagaaatctcctcgccaatccacccctgcc
cagagtcctgcacaggcaacgcagcatcttgagcagtccggccttgataagctcagtaag
gacctgctttctctgaatctcaacacgagtacctcatataaccccagcccagaatcagtc
cccattggaggagccagacgaaaggtgaaacccaaccctcagagggattcagcaggcggg
gaggcagattcacccctgaaactcaagtcagaaaaaggcagagctggagaggacaagcat
gcagaggttacccctgtaaaaacagagacacctgaacggacgatcccggagtctgtggtc
actggaaattcagctgccgtggatgaccaggagagctcagtaatggaggccgctggtggt
catgccactatgatgtcagttttagaatgtgtctttggagcacaagccacagatttggac
accatgtatgcggtggacccgttgccatggtgcccacacttggagtcagtgcaaccggtg
cccgcgggtggcatcgatgtattcctgccgtgtgaagagtgtggaggtgatacagaaaac
tggatctgcctctactgctacaaggtactctgtgggcgttatgtgaacgagcacatggtg
gcccatggggaggtgtcaggtcaccctatggtgctgagcttcactgacctctcagtctgg
tgctacacttgtgagtcatacgtccacaacaaggtgctccatgaagccaaaaatgccgct
caccttgtgaagtttggagaggagattcctccattcagctaa
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