Garra rufa (doctor fish): 141286648
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Entry
141286648 CDS
T11039
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
grf Garra rufa (doctor fish)
Pathway
grf04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
141286648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141286648
Membrane trafficking [BR:
grf04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
141286648
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
141286648
RAVE complex
141286648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
NBCH_WD40
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_Vps41
VPS11_N
Beta-prop_SPT8
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
141286648
NCBI-ProteinID:
XP_073674810
LinkDB
All DBs
Position
15:complement(45185976..45266091)
Genome browser
AA seq
2937 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNQPFTAYASGCDIVILGSDFERIQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGNIICVFEPVEVSPQGKAQKKLNYHWQKSGQFLLQSVAHILTWH
PTGSCLLTGSACLQMWCDVQSGTDTGEEAETSAPQRSWRCVWQCKSAAPTHFIRFSPDGE
FFATAGQDDCLLKVWYSTSKWQADVTKLFTPLDLSSGAEINFSFIYLAHPRSITGFSWRK
TSKYMPRGGVCNVLLTCCKDSVCRLWAETLLPSDCLLSGLRHNHSSSNDAIKPNNVKKSS
SNTRAQNHSPLELKLKPSWREEVRCLSQLSYSGPLPQQQNKHYAHRTNMLHANALCHFHI
AASINPATDIPLLPSISSMNGSDEEEPGGPFTVHWLNNKELHLTLSMEVFLQQLRSSGEQ
NGPTEPCDADEEGNGADAAALSSIALPATAAVDHQVDVLLGDWNRAADMLFSIHPMDGSL
LVWHVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDANSLSRSVVMYACNRNVDLAIQHGR
QRPAGLPHSSSALIGLGQNKASSNSLRLSIFTPSVLMISKHADGSLNQWAVSFAEDSAFS
AVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTPDGDAALTRPAAAPSHRSR
VSSGGVSQDPNAIYSELILWRVDPVGPLSFSGGVSELARINSLHASAFSNVAWLPALIPS
NCLGVYGNSPSACFIASDGHSLRLYQAIIEAKKLLSELSNPDISKYVGEVFNIISQQSTA
KPGCIIELDAITDFQGKETQLLHVFEEDLILGNEKADDYLQDSVPSRTLFSARFFLVVVE
ITQSGRSLLHMWHLQLDAVPVIMEETQTPDGETVPPSPVNNSQFNFDTVGSPQTQRPKLN
TSNLQSACRLTLTNTKVFSQELDLPQGVQVIRVSPAAGHLSASSLQPAGRAPYLLATSCS
DGSVRFWRCSAVSDADGGAVPSYVWEEWPLLVEEGVASSSALSVSGQLMGLSCCHTSRVA
VAHKSDGLTVGEPLMNVSIFQCDSTGGSQWILEQTLKVCGSYSPSVNDCDLSLRNACSAV
ASKKQVHLDWVSREDGSHTLTVGLGSKLYMYGMLSGKPPDLGLSDSSRERHGSHMMLLRV
VDLVSSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPVPVKPSFNGSATSLNSAA
KQDGLSPNPSKKTLTRSMTSLAQKLSGKRTAYDLPAEMEDSGLFEAAYNLFPTLPQYHPV
QLLELMNLGKVRRAKAILSHLVKCIAGEIVSMKDTTINQERRLRSLTISASGSTSRDPKM
FSKAESSDYTEIDSIPPLPLYALIAADEETAPSAKERTESVSGHGVRTSSQSDTYEELFQ
SAGVSTDDLDPFDGDEEDGNAKVIDLSKYSPTFFGSEHAQVLSGHLLHSSLPGLTCMEQM
SLMALADTIASTSTDIGESQGKGKGGETLDECGLKFLLAVRLHTFLLTSLPPAHRAQLLC
QGLSTCHYAWAFHSEAEEELLNMLPALQKGEPMWPELRAMGVGWWLRSTNKLRRCIEKVA
KAAYQRNNDPLDAALFYLAMKKKAVVWGLYRSQQNVKMTAFFSNNFSEDRWRKAALKNAF
SLLGKQRFQHSAAFFLLAGSLKDAVEVCIEKMQDLQLALVVCRLYETEFEMSCTYKRILQ
RHVLGQDHQIAPHQDPFLRSMAYWVLDDYSKALDTLLEPNAHTSHEGSTGSSPCSSDVFN
FYTYLRTHPLLLRRHFGSSDKAKVGLTAEGRAVDSISLTERRLFFTAAYAHLQSGCPMLA
LEVLSKMPKVVKRSKVLENPSLSLSEHKEEISALDWSQPVLNGLESVSSLSSPRENSQSD
SVLSFDWSHPSVTLQDEPLDLKWDSDKEDSDEEESGLAMKTIHPEKDDGGPVVTSTPSDH
IADDSPALTEDILADQLKFSSCLKILTTELRTLSTGYELDGGKLRHQLCHWLERAVSALQ
RCCGYNPFLQHLPEGISADLSQVEDLEEQGAAEQARELQHRRRLWLKRNQPLLRIFLSYC
SLHGSHGGGLASVRMELILLLQESQQDGGLQISAPAPQHLCVPLFLAWTASSKTVVANPI
VHLTNLTHDILHTINALDAPPHPDVVNNEIYVMHTLAASLSACIYQCLCDGHSYSHVNPF
TGITYQSVLLTHQPPVRSVSMEEAVLPNTSPAQWPGVSVLMRLLSASGEENQPGLPVLLC
EILTAVFLSLFVHGLATHSTHELFRIVAHPLNSKLWVAVFGGGARVPVPEKPSSPTVEDA
ERKQRRFRLRSSRSNSREVPDSPLSPRPVVMEPESSVCKERFVPPELSIWDYFIAKPYLP
PSASRVEYDSEESQGSEDDEDEDEDDSFDPNSPLTEHSNNNSYSWCLMRLAMVQTVLFNL
KTFYPMAGHDLLDLPVCSPLCHAALKTLQRWEQLLLKRLEIFGGPPSEFICTQLLEESVS
SGPALLRHKALFEPSNTPFRSRRRSALPVKRLWQYLVKQEEVQETFIRNIFTKKRDQSEE
TDSVKCSVPPESTHNQIEADQGFPGGKARIIHKESDIITAFAINKANRNCLVIASTHDIQ
ELDVSSILATQILTWIDEENETEVKGTDDFLVVHARDDFTTLHGTTPYTHSSPGTPINMP
WLGGVQTGRGAAVLIKRNINNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSP
GNSRVTRIRFNYQGNKFGIVDADGALSLWQTSTSGNTPKPYLTLQCHNKTANDFVFVGSS
SLIATAGLSTDNRNVCLWDTLVTPAYSLVHAFSCHESGCTVLSLASKQQLLISGGRKGWI
SVLDLSLKIQRQSFQAHDSPVKALAVDSSESCFISGSAEGNIKVWSMSTQSLLHTFSSEH
ARQSLFRNLGTGVMQIETGPANHVFSCGADGTMKMRVLPDVLSLYCSGVRNDVKFIM
NT seq
8814 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcaccaggtgctcacgggggccgtcaaccccggagacaactgcttctctgtg
ggcagcgtcaacaaccagcccttcacggcgtacgcttctggctgtgacatcgtcattctg
gggagtgactttgaaaggatccagatcatcccaggagccaaacatgggaacattcaggtg
ggctgcgtggactgttcactgcagggcggacagatcgcagcgtcgtacggaaacattatt
tgtgtgtttgagccggtggaggtcagtccacaaggaaaagcacaaaaaaagctgaattat
cattggcagaagagcgggcagttccttcttcaatcggtcgcacacatcctgacatggcat
ccgacgggttcatgtctcctgacgggctcggcgtgtctgcagatgtggtgtgatgttcag
tccggcacagacacaggagaggaggccgagacgtccgctcctcagcgctcctggagatgc
gtatggcaatgcaagtcggccgctcccacacactttatcaggttttccccagatggagag
ttttttgcgaccgctggacaggatgactgtctgctgaaggtgtggtacagcaccagtaaa
tggcaggcggacgtcaccaaactcttcacgccgctggacctgagctccggagccgagatc
aacttctccttcatctacctggctcaccctcgctccatcaccggcttctcctggaggaag
accagcaaatacatgcccagaggcggcgtgtgtaacgtgctgctgacctgctgcaaggac
agcgtgtgtcgcctgtgggccgaaacccttctgcccagcgactgtctgctgtctggactc
agacacaaccacagcagcagcaacgacgcgatcaagccgaacaacgtgaagaagtcctcc
agcaacacccgagcgcagaaccacagcccgctggagctgaagctgaagccgtcgtggaga
gaggaggtgcgctgtttatctcagctctcatacagcggtcctctgccccagcagcagaac
aaacactacgcccatcgcaccaacatgctgcacgccaacgcactgtgccacttccacatc
gccgccagcattaacccagccacagacatccctctgctgccctccatctcgtccatgaac
ggctctgacgaggaggaaccgggcggccccttcaccgttcactggctcaacaacaaagag
ctgcacctgacgctgagcatggaggtgtttctacagcagctgaggagcagcggagagcag
aacggacccacagagccatgcgatgctgatgaggaggggaacggtgctgatgctgcggct
ctgagctccatcgctctccctgcgacggcggctgtggatcatcaggtggacgtgctgctg
ggcgactggaaccgagcggcagacatgctgttcagcatccaccccatggacggatcgctg
ctggtgtggcacgtcgactggctggacgaataccaacccggcatgttccgacaggcgcag
gtttccttcgtgtccaggattcccgtggccttccccaccggcgacgccaactcgctcagc
cgcagcgtggtcatgtacgcttgcaacagaaacgtggacctggccatccagcacggccgt
cagcgacccgcgggcctgccgcactcgtcctccgctctgatcggcctgggtcagaacaaa
gcctcctccaacagcctgcgtctcagcatcttcacccccagcgtcctgatgatctccaaa
cacgccgatggctcgcttaaccagtgggccgtcagcttcgcagaggactctgccttctcc
gctgtgctcagcgtctcccacaagtctcgatactgcggccaccgcttccacctcaacgat
ctggcctgccactctctgctcccgctgctgctcaccacctcgcaccacaacgccctgagg
acgcccgacggagacgccgctctgacccggcccgccgccgccccgtcccacaggagcaga
gtgtcgtccggcggagtctcccaagatcccaacgccatctacagcgagctgatcctgtgg
cgggtggatccggtgggcccgctgtccttctcgggcggcgtgtcggagctggccaggatc
aactcgctgcacgcgtccgccttctctaacgtggcctggttacccgcgctcatccccagc
aactgcctcggtgtgtatggaaactcacccagtgcctgcttcatcgccagtgacggacac
tcgctccgactctatcaggccattatcgaggccaaaaaactgctgagtgaactctccaat
cctgacatctccaaatatgttggagaggtgtttaacatcatcagccagcagtcgacggcc
aaaccaggctgcatcattgagcttgatgccatcactgactttcaggggaaagagacacag
ctgttgcatgtgttcgaggaggacctgattttgggaaatgagaaagcagatgattacctg
caggattctgttcccagccggacgctcttctccgctcgcttcttcctggtggtggtggag
atcactcagagcggcaggtcgctcctgcacatgtggcatctacagctggatgcagttcct
gtcattatggaggaaactcaaactccggacggagagactgtgcctccatcacctgtgaac
aactcacagtttaacttcgacacggtcggctcaccacaaacccagagacccaaactaaac
acatccaacctccagagcgcctgccgcctcactctgaccaacaccaaagtcttcagccag
gagctggatctgccgcagggtgtgcaagtcatacgtgtgtcacctgccgcaggtcattta
agcgcctcatctctgcagccagccggacgggctccgtatctgcttgccacgtcctgctca
gacggatccgtcaggttctggaggtgcagcgccgtgtctgacgccgatggcggtgccgtc
ccgtcatacgtgtgggaggagtggcctctgctggtggaggagggcgtggccagcagcagc
gctctgagtgtgtccggtcagctcatgggtctcagctgctgccacaccagcagagtcgca
gtagcgcacaagagcgacggtctgaccgtcggagagccgctaatgaacgtcagcatattc
caatgcgactccactggaggatctcagtggatactggagcagacgttaaaagtctgcggc
tcctacagcccgagtgtgaatgattgcgatttaagcttgagaaacgcatgttcggcagtc
gccagtaagaagcaggtgcacttagactgggtttccagagaagatggttctcatacgtta
accgtgggtctgggatctaaactttacatgtacgggatgctttcaggaaaacctccagat
ctaggactatccgatagcagtagggagcgccacggctctcacatgatgctcctccgagtg
gtggatctggtgtcatcggttgagggttcgctacccatccctgtctctctgtcttgggtg
agagatggcatcttagtagtcgggatggattgcgagatgcacgtctattcccaatggcag
ccgccggttccagtcaaaccgtcgttcaacggtagcgcgacgtcgctcaactctgcggcc
aaacaagacggactaagtccgaacccttcgaaaaagaccctcaccagatccatgactagt
ttggctcagaaactcagtggaaagaggaccgcgtacgatctcccggctgagatggaggat
tctggtttgtttgaggcggcgtataacctgttcccaactctgccgcagtatcatccggtg
cagctgctggagctcatgaatcttggtaaggtgcgacgagccaaagccatcctgtcccat
ctggtgaagtgcattgccggggaaatcgtatctatgaaggacactacgattaaccaggaa
cgccgtctgcgctcgctcaccatcagcgccagcggaagcacttctagagacccgaagatg
ttcagcaaagccgagagctcggactacaccgagatcgactcgatcccgccgctgcctttg
tacgcgttgatagcggctgatgaggaaacggctcctagtgccaaagaacgaacggagagc
gtgagcggccacggcgtgcggacatccagccaatccgacacttacgaagagctcttccag
agcgccggagtcagcacggatgacttggatccttttgacggagacgaggaggacggcaac
gctaaagtcatcgatctgtcgaagtacagccccacgtttttcggctctgagcacgctcag
gtgctttcgggacacctgcttcattctagtctgccggggctgacgtgcatggagcagatg
tctctgatggctttggcggacaccatcgcttccaccagcactgacatcggagaaagccaa
gggaaaggcaaaggtggagagacgctggatgaatgtgggctgaagttcctgctggccgtt
cgtctgcacaccttcctcctgacgtctctacctccggctcatcgagctcagcttctctgt
caaggtttgtccacctgtcactacgcttgggcgttccactccgaggctgaagaggagctt
ctcaacatgcttccggccctgcagaaaggagagcccatgtggccggagctgagagccatg
ggagtgggctggtggctcaggagcactaataagcttcgcagatgcattgagaaggtagca
aaagctgcttatcagaggaacaatgacccattagacgcagccttgttttatctggccatg
aagaagaaagctgtggtttggggactctacaggtctcaacagaacgtgaagatgacggcg
ttcttcagcaataactttagtgaagatcgctggaggaaggcagcactgaagaacgccttc
tctctgctcggaaaacagcgtttccagcattcagcggctttctttctgctggccggatcc
ctgaaagatgctgttgaggtttgtatagagaagatgcaggatcttcagctggctctggtg
gtctgtcggctctacgagactgagttcgagatgtcctgcacctacaagcgaatcctgcag
aggcacgttttgggtcaggaccaccagatcgcaccccatcaggaccctttcttacgcagc
atggcgtactgggtgttagatgactacagcaaggctttagatacgctgctggagcccaat
gcacacacgtcacatgaaggaagcaccggatcatctccctgtagttctgacgtttttaac
ttctacacctacctccgcacgcacccgcttctgctgcggcgccacttcggatcctccgat
aaagctaaagtgggtctgaccgctgaaggtcgtgccgtcgactccatcagccttacagag
cgacggctcttcttcaccgctgcttacgctcacttacaatctggctgtcccatgctggct
ttagaggtgctctccaaaatgccgaaggtggtgaaacgctcaaaggtgcttgagaatccg
tccttgtcgttgagcgagcacaaagaagaaatctcggctctggactggtctcaaccggtt
ctcaacggcttggagtcggtgtcctcgctctcgtctcccagagagaacagtcagtcagac
tcggtgctcagtttcgactggagccatccgtccgtcaccctccaggacgagcctctggac
ctcaagtgggacagtgacaaagaagactcagatgaggaagaatcaggcctggcgatgaag
accatccatccggagaaagacgacggtggtccagtagtaacatccactccctccgatcac
attgcagacgattcgcccgccctgaccgaggacatcctcgcggaccagttgaagttcagc
tcctgcctgaagatcctcaccacggagttgcggacgctttccacgggatacgagctggac
ggaggaaagctgcggcatcagctgtgccactggctggagcgagccgtttctgcgctgcag
agatgctgcggatacaaccccttcctccaacacctgcccgaaggcatctcagccgatctg
agccaggtggaggatctggaggagcagggcgccgcggagcaggccagagagctgcagcac
cggcgcaggctgtggctgaagaggaaccagcccttgctgcgcatcttcctgagttactgc
agtctgcacggatctcacggaggaggactggcctccgtcaggatggagctcattctgctg
ctgcaggagtctcagcaggacggcggtctccagatctccgctcccgctccgcagcacctg
tgcgttcctcttttcctggcgtggaccgccagctccaaaacagtggtggccaatcccata
gtgcacctgaccaacctcacacacgacatactgcacaccatcaacgctctggatgcacct
ccgcacccggatgtcgtcaacaacgagatctatgtgatgcacacactggcagcctctctc
tccgcctgcatctaccagtgtctctgtgacggacacagctacagccatgtcaatccgttc
acgggcatcacctaccagagcgtcctgcttacccatcagcccccggtgaggagcgtcagc
atggaggaggccgtcctgcccaacacctctcctgcacagtggcctggtgtgagcgtcctg
atgcggctgctgagcgcgtccggagaggagaaccagcccggcctgcctgtgcttctgtgt
gagatcctgaccgccgtcttcctcagcctcttcgtccacggtctggccactcactccacc
cacgagctcttccgcatcgtcgctcacccgctcaacagcaagctgtgggtggctgttttc
ggcggcggagctcgtgttcctgtgcctgagaaacccagctcacccacagtggaagatgcg
gagcggaagcagcggcgtttccgtctgcgttcatctcgcagtaactccagagaggttccc
gacagtccgctcagtcccagacccgtggtgatggagccggaatcatccgtttgcaaagag
cgtttcgtcccgcctgagctcagcatctgggattatttcatcgcaaagccgtacctgcct
ccgtccgccagccgagtggagtacgactccgaggagagccagggcagtgaggatgatgaa
gatgaggatgaagatgattcctttgatcctaactctccactaacagaacattccaacaat
aactcatacagctggtgtctgatgcgtttggccatggtgcagacagtgctcttcaacctc
aagaccttctacccgatggcaggtcacgacctcttagatcttcccgtgtgttctccgctc
tgtcacgccgctctcaagacgcttcagcgatgggagcagctgctcctcaagaggctggag
attttcggaggtcctccgtcggagttcatctgcacacagctgctggaagagagcgtgtcg
tcgggtccggctcttctgcggcataaggccctgttcgagccctccaacacacccttcagg
tctcggcggcgatccgctctccccgtcaaacggctgtggcagtatctggtcaaacaggaa
gaggttcaggagacgttcatacgcaacatcttcaccaagaaacgagatcagagcgaggag
actgacagtgtcaaatgttctgtgccgccggagtccacacacaaccagattgaggccgat
caggggtttcctggaggaaaagctcgtatcatccacaaggagtctgacattatcacggcg
ttcgccattaataaggccaatcgcaactgtttagtgatcgcctccactcacgacatccag
gagctggacgtgtcctccatcctcgccacacagatcctgacctggatcgatgaggagaac
gagaccgaggtcaaagggacggatgatttcctggtggttcacgcgcgggacgacttcacc
accctgcacggcaccacgccctacacccacagcagccccgggacgcccatcaacatgccc
tggctgggcggcgtgcagacgggcagaggagccgccgtgctcatcaaacgcaacatcaac
aacgtgaggcggatgacgtcacaccccacgctcccctactatctgaccggagctcaggac
ggcagcgtgcggatgtttgaatggggtcactcacagcagatcatctgcttcaggagccca
ggaaactccagagtaaccaggatacgcttcaactatcagggcaataagtttgggatcgtg
gatgcagacggagcgctcagtctctggcagaccagcacctcaggaaacactcccaaaccc
tacctgacgcttcagtgtcacaataagacggccaatgacttcgtgtttgtgggttcgtcg
tctctcatcgccaccgcaggcctgtccacagacaacaggaacgtgtgtctgtgggatacg
ctggtcacgccagcatacagtctggttcatgccttcagctgccacgagtccggctgcacg
gttctgtctctggcgtccaaacagcagctgctgatcagcggaggccggaagggctggatc
agcgtcctggacctcagtctgaagatccagcgccagagtttccaggcacacgactccccc
gtcaaagccctggccgtggactccagcgagagctgcttcatcagcggatccgccgagggg
aacatcaaggtgtggagcatgtccacccagagcctcctgcacaccttcagcagcgaacac
gcccgtcaatcgctcttccgcaacctgggcacgggcgtcatgcagatcgagacgggcccg
gccaatcacgtcttctcctgcggggcggacggcaccatgaagatgcgcgttctcccggac
gtcctgagcctctactgcagcggcgtcaggaacgacgtcaagtttatcatgtag
DBGET
integrated database retrieval system
