Garra rufa (doctor fish): 141286911
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Entry
141286911 CDS
T11039
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141286911 (rbm39b)
Spliceosome [BR:
grf03041
]
Common components
Common spliceosomal components
General mRNP proteins
141286911 (rbm39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
PRP38_assoc
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
141286911
NCBI-ProteinID:
XP_073675141
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All DBs
Position
15:complement(10453893..10474790)
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AA seq
523 aa
AA seq
DB search
MADDFDVEAMLEAPYRKGESKSSSANGHNEERSKKKRRSRSPSPGRRRSRSGDRKKSRER
RKSRSRERKRSRSKERKRSRSRSKERGGRYRGRKSPFMGPKLNGGPGGKTGPQHFTKHSR
RRSRSKSPFKKEKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDV
RMISDRNSRRSKGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMASML
QRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAE
CAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDSDELERTGIDLGTTGRLQLMAR
LAEGTGLQIPAAAKQALQMSGSVAFGNLANASTTQPIHPCPGMNQAMNLPNQPLATHCLQ
LSNMFSPQMESEPGWDLEIKDDVIEECRKHGGIVHIYVDKNSSEGNVYVKCPTIPVAMAV
VSSLHGRWFAGKMITAAYVPLPTYHNLFPDAATATELLRPMHR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgacttcgacgttgaggccatgctggaagctccttacagaaagggtgaaagc
aagtcttctagcgccaatggtcataatgaggaacgcagcaaaaagaaaagacggagcaga
agtccgagcccaggccgccggaggagtagaagcggggaccgcaagaagagccgcgagcga
cgcaagagccgtagccgcgagcggaaacgttcacggagcaaagagcgtaagcggtcgcga
tctcgcagcaaggaacgtggtggacgttatcgtggacgcaaaagcccctttatggggccg
aaattaaacggtggtcccggagggaagaccggcccacaacatttcaccaaacacagtcgc
aggcgctcacgaagcaaaagcccgtttaagaaggaaaaaagccctgtcaggcaaccaata
gataatctgagcccggaggagagagacgcccgtacagtgttctgcatgcagctcgctgcc
agaattagacccagagatcttgaagatttcttctctgcggtgggaaaagtccgtgatgta
aggatgatctcagatagaaactctcggaggtcaaaaggcattgcctacgttgagtttgtg
gactctacatcggtaccgctggcaatcggcctgacaggacagcgggttctgggagtgcct
atcatagtccaggcttcacaggctgagaagaacagggcagcagccatggccagcatgctc
cagagaggtggtgcaggaccaatgcgactgtacgtaggctccctgcacttcaatataact
gaggacatgctgaggggcatttttgaaccatttggaaagatcgagggcatccagctaatg
atggacagtgagactggcaggtcgaaaggatacggcttcatatcatttgcagatgcagaa
tgtgctaaaaaagccctggagcagctaaatggtttcgagcttgctggacggcctatgaag
gtgggtcatgttacagagcgttcggatgcatcctctgcaagctccttcttggacagtgat
gaactggagagaactggcattgacttgggcacaacaggtcgacttcagctgatggcaaga
ctcgcagaaggtacaggactgcagattcctgctgctgccaagcaggccttacagatgagc
ggctctgtggcttttggaaatctggctaatgcctcaaccacacaacctattcatccctgt
cctgggatgaaccaagctatgaaccttccaaaccagccgctggcaacgcactgcttacag
ctgtccaacatgttcagtccacagatggaaagcgaacctggctgggacctggagataaag
gatgatgtcatcgaagagtgcagaaaacacggaggcattgttcacatatacgtcgacaag
aactcctctgaaggaaatgtttatgtaaaatgtccaaccatcccagtagcaatggctgtt
gtcagttccctgcacggccggtggtttgcaggtaaaatgatcacagctgcctacgtgcct
ctccctacgtatcataacctgtttccagatgctgccacagccacggagctcctgaggcca
atgcaccggtga
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