Garra rufa (doctor fish): 141287137
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Entry
141287137 CDS
T11039
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141287137 (ddx20)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141287137 (ddx20)
Spliceosome [BR:
grf03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
141287137 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
AAA_19
AAA
Diphtheria_T
Motif
Other DBs
NCBI-GeneID:
141287137
NCBI-ProteinID:
XP_073675370
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Position
15:22138398..22147717
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AA seq
767 aa
AA seq
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MAASAKAAHELQTRTRTDDVLINGGVEFSSLLLSKPVLEGLSTSGFQRPSPIQLKAIPLG
RCGLDLIVQAKSGTGKTCVFTTIALDSLILENTTTQVLVLAPTREIAVQIHAVVMAIGSA
MEGLECHVFIGGRPVCQDKLHLKKCHIAIGSPGRIKQLIEMGTLTTSSIRLFVLDEADKL
LEDDISSSFQEQINWIFSSLPANKQMLALSATYPESLAQHLSRYMREPTFVRLNPTDPGL
LGLKQYYKIVPSHSLLHKIFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKG
LPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETY
MHRIGRAGRFGTLGVAVTYCCHGEEENKMMAIAQKCSLNLTHLPDPIPPGIMEEACDWDV
IIEPPSKPKQKMPDVPKPEKKKKLAKSEKPTLKPSREPQISTVIPERATVDQSYSGAETK
VKNHSPKPSRQKPLQSATNLQHDSTPARNEQNDTIPKIPPLSSFKLHTRKVMTFSEALAD
YENFITEGPGRSVEIIRQYGFNRSQDAVNGLHKGHDDDDDDDDGDDVKAYESYVLEDSHS
LQALPPPQEVSELSSEQKTLSMSSDGSSSESEMEVGSESSSSVPNRSSHHTPALPDNRVA
ELNKSSFQTIRNEQRPGKSQSQNPASHHSLPKKHQPASKSSRKAASARQKGRKRETDELE
EEVVEQDYWSSYRAWVEYYNSYYHHSPYNWMTAYYMNSVYIKEMMKR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccgcgaaagcagcgcatgagctgcaaaccagaacccggacagatgatgtt
ctgattaacgggggtgtcgagttcagctctttgctcctgtcaaaacctgtgcttgagggt
ttatctacctctggctttcagagaccgtcgcccatccagctgaaggcaatcccactggga
agatgtggactcgatcttattgttcaagccaagtctggcacaggaaagacctgtgtgttc
accaccatcgctttggattctcttatattggaaaacacgaccacccaggtgctggttttg
gcccccactcgggaaattgcagttcagattcatgctgttgtcatggctataggcagcgct
atggagggtttggagtgtcatgtgttcattggtggtcgacctgtatgtcaagacaaactc
cacctgaagaaatgccacattgccattggttcaccaggtcgtattaagcagctaattgag
atgggaaccctgactacatcctccatacgcttgtttgttttggatgaggctgataaactg
ctggaggatgacatcagcagcagttttcaggagcagatcaactggatcttctcttcttta
cctgcgaacaaacaaatgttggctctttccgccacctacccagaatctttagcccaacat
ctgtcaagatacatgagagagccgacatttgtgcgactgaacccaacagaccctggacta
cttggattgaagcagtactataaaattgtgccgtctcattcattacttcataaaatcttt
gaagagaaggttcagagtctccttgaactcttcagcaaaattccatttaaccaagcgctg
gtattctcaaacctccatacaagagctcagcacctggctgatatcctctcctctaaaggt
ttgcctgcggtctgcatctcaggtggtttaagtcaggatcagaggttagaggcgatgtgg
aagctgaaacaatatcagtgtcgagttttaatatccactgatctgacctcacgtggtatt
gatgctgagaaggtgaacctggtgattaatctggatgttcctcaggactgggagacctac
atgcaccgtattggtcgtgctggacgatttggcactctgggggttgctgtgacctactgt
tgccatggagaggaagaaaacaagatgatggccattgctcagaaatgctctcttaatctc
actcatttaccagatccaatccctccagggatcatggaagaggcttgtgactgggatgtg
atcattgaacctccttcaaaacccaagcagaaaatgcctgacgttcccaaaccagagaag
aagaagaaactagctaaatcggaaaagcccacattgaaaccttccagagagcctcagatc
tcgacagtcatcccagaaagggcaacagttgatcaatcctacagtggagctgaaacaaag
gttaaaaatcactcacccaaacctagtaggcaaaaaccattacagtctgctacaaacctc
cagcatgactcgactcctgctcggaatgaacagaatgacaccattcccaaaattccccca
ctttcgtcttttaagttgcatacacgaaaagttatgacttttagtgaggctttagcggat
tatgagaatttcataacagaaggtcctggaagatctgtcgaaatcattcgccagtatgga
ttcaacaggagtcaagatgcagttaatggactgcataagggccatgatgatgatgatgat
gatgatgatggtgatgatgttaaggcttatgaatcatatgttctagaagattcacactcc
cttcaagctcttcctcctccacaagaggtttcagagttgtcctctgagcagaagactctt
tccatgtcatctgatggctcttcttcagagtctgagatggaggtggggagcgaatcaagc
tcttctgtccccaatcggtcctcacatcacacacctgctcttccagacaacagagttgca
gagctaaataaatcctcctttcagaccatcagaaacgagcaaaggcctggtaaatctcaa
tcccagaatcctgcaagccaccacagccttcccaagaaacaccagcctgcctctaaatcc
agcagaaaggctgcctcggcaagacagaagggtagaaagagagaaactgatgaactggaa
gaggaagtggtcgagcaggattattggagttcatacagagcctgggtggaatattacaat
tcatattatcaccattcaccctataactggatgactgcgtattatatgaattctgtctac
ataaaagaaatgatgaaacgctaa
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