Garra rufa (doctor fish): 141287282
Help
Entry
141287282 CDS
T11039
Symbol
prdm2a
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf00310
Lysine degradation
grf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
141287282 (prdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141287282 (prdm2a)
03036 Chromosome and associated proteins [BR:
grf03036
]
141287282 (prdm2a)
Enzymes [BR:
grf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
141287282 (prdm2a)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
141287282 (prdm2a)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
141287282 (prdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_4
zf-C2H2
zf-C2H2_6
zf-C2HE
zf-C2H2_ZNF462_1st
zf-C2H2_11
zf-H2C2_2
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
141287282
NCBI-ProteinID:
XP_073675516
LinkDB
All DBs
Position
15:complement(23267094..23274898)
Genome browser
AA seq
1487 aa
AA seq
DB search
MWRSDDIEEEERPSMASEVFLQQHEVQDAHSDETALHSISEPDGGKIEKETEDVKMDCKD
KQNASESVSQNLANQNQACQTSEIEHVEMIKQDYGTELTLNETKGDLDPNSKPQGELPCP
RCERRFASSQGLQRHIQTHALSTCHTQRFKCSRCRRTFSTLFSRRRHEKRHENRNKKTDD
LPDAPCTSCQNVPGSAKPLKTASEPNKCINVADGEQDNKNSDVKASHVCKYCKKVFRTHN
SLRRHQRRIHERHLLPRGVYKKVKIIQEPERQQLIETAQDSHTGSSQCAEDIDQEREYMV
DISSNISENLSFYIDGKIVSTSAVNNCEVIEINSGGSAVIGLNAVIISPAQITQALKLET
NASSFTSDLSGQSSTRRRTSTPPLLPQIKTELESETILSTSSSTLSSLTLSSTSGSPLVA
TRLPQCIETVAFHKEKTVYLSPKLKQILQNQDGSKQAFALIADGHKLGPPLSLTVLPATT
SRFKRRTTSPPSSPQQTPDVTIEQQDLDSTESKKPKLEIHGLSLLGNEEPEPLISPINSS
DGAPVQQQILPLDCSLSRTGGNSCNQQPLDLSNSVVKQESSDALAESILDLSISGKSLDC
DPAGVYLTQPALIRKSKPNSSILQKVLMNEYGVEDIPSVEAPAAAGVLSVPDIANLAVVA
VSDAGPPKPEKFLFELALPPASINPTPPLLAPVSIYPATPVPPPQCSPSPSPTFVSFLST
PTVEPSQDIQTLHSAFVVSDNVIPTGGLEDCGDNPIHLSQGDLKVTIPDWGSSAPGGLET
LIPAVPSLSLQSPHWVADPAVCELAQRTLVVDSVLASDAQIFSPPLPVNQSNVTSLAFPP
NTVVIEYTVAVQSTENILPALSDKIPVDALQQEPYVPSEPQPPSLDTTLLPETSTELAPT
EQLTSPTDTLSLTASTSVAEAETNEIGQEYVQSSDCSKQENKVEEELPPLHPFCKNFMCN
VCEQPFQSMKILSQHIGEHSKEWPYKCEFCVQLFESDTGLLEHRSSYHGIGKIYVCKTCS
KEFAFLCNLEQHQRDLHPGQECSQTEAVHGKLRPENHNSPKIDMADPVLPITEIKQEVDN
TTSKAEKDALENTSEELFTTIKIMASGGVKSKGPDVRLGINQHYPSFKPPPFPYHNRTPT
GTTAASATNFTTHNIPQTFSTAIRCTKCGKSFDNMPELHKHILACANASDKKRYTPKKNP
IPLKQFAKAQNGVLSPARIVNSKQNLSQKLGQPKKLHFHESSVKMSILNKKKSHLVQRGR
PAGGRKAFAQDDLGVFACPHCRREFTYNASLKKHVAFSCPMRPANRISSKKRTLSIVSAQ
ENNGSLRRQIANMSAKPQGSDHGPKTITKNQIIKQNAAADSTQDFRLKRSTILSTSVVQS
SKKAKPILKSGFMPQLASKQIVLSSVAQVNCREPGVRLHVLGRKMEQRVGDIKIQPRRED
RLSLRLRERAGGPVTRSVQQASTTTTVLKQPDSHNIIMRPVILQVKK
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgtggagatcagatgacattgaagaagaggagaggcctagtatggcatcagaggttttt
ctccagcagcatgaagttcaagatgcccactctgatgaaactgcactacatagcatctcg
gagccagacgggggaaagattgaaaaagagacagaagatgtgaagatggactgcaaagac
aaacagaatgcaagcgagtctgtgtcccaaaatctagctaatcaaaatcaagcctgtcag
acaagtgagattgagcatgttgaaatgataaaacaggattatgggactgagttgacttta
aatgaaactaagggtgaccttgaccctaatagtaaaccccagggtgaattaccttgtcct
cgctgtgagagaaggtttgcaagtagtcaaggcctgcagcgtcacatacaaacacatgca
ctttcgacctgccacacacagcggtttaaatgcagtcgctgcagaaggactttcagtaca
ttgtttagtcgtcggaggcatgagaaaagacatgaaaacagaaataagaagactgatgat
ctcccagatgcgccttgcacttcctgtcagaatgtgcctggcagtgccaaacctctgaaa
acagcatcagagccaaacaagtgcatcaatgtcgctgatggtgaacaggataataaaaac
agtgatgtcaaagcctcacatgtttgtaagtattgcaaaaaagtctttaggactcataat
agtctaagaagacatcagcgtaggattcatgagcgtcatcttcttcctagaggagtttat
aagaaggtcaaaatcattcaagaacctgaaagacaacagcttattgagacggcgcaggat
agccatactggtagctcacagtgtgcagaggacatcgatcaggaaagggagtacatggtt
gacatctccagtaacatttcagagaatctcagcttttacatagatgggaaaattgtctcg
acaagtgctgtaaataactgcgaggtgattgagataaactctggaggttctgctgtgatt
ggattaaatgctgttataatcagtccagctcaaattacacaagctcttaaattggaaacc
aatgccagcagttttacctctgatctgtctgggcagtcctcaaccagacgtaggacatct
accccacctttactcccacaaataaaaacagaattagagtctgaaaccatcttgagtacg
tcctcatctactctgtcatccttaacactgtcctctacatccggatctccgttggtcgct
actcgtttacctcagtgcattgagacagtcgcttttcacaaggaaaaaactgtgtatctg
tctccgaaactcaagcagatcctgcaaaatcaggatgggagtaaacaggcatttgcactg
attgctgatggccacaaattgggtcctcccttatccttgactgttttacctgcaacgaca
tctagatttaagagaaggacaacctcccctcccagctcaccacagcaaacccctgatgtg
actatagaacagcaggatcttgattctacagaatccaagaagccaaagttggagatccat
gggttgagccttttgggcaatgaagaacctgagcctttaatttcacccataaacagctct
gatggagctccagtacagcaacagatcttgcccttggactgctctctatcaagaactggt
ggaaactcctgtaatcaacaaccactggacctctcaaattctgtggttaagcaagagagc
agcgatgccttagcagagtccattctggacttaagtattagtggaaagagtttagactgt
gacccagctggagtctacctcactcagcctgctttaataaggaagagtaaacctaactct
agtatacttcagaaggtgcttatgaatgagtatggtgtggaagatattccttctgttgaa
gctccagctgctgcaggtgtcttaagtgtccctgacatagcaaaccttgcagttgtggca
gtgtctgatgcaggtccaccaaaacctgaaaagttcttgttcgaattggctcttcctcct
gcttcaatcaatccaacccctccactgctcgctcctgtcagtatctatccagctacccca
gtacctccacctcagtgttcaccttctccatctccaacttttgtatcctttctatcgact
cccacagtggaacccagtcaggacattcaaactcttcattcagccttcgtagtatctgac
aatgtaatacccacaggaggtttagaagactgtggtgataatcctatacatctttcacag
ggtgatttgaaagtgacaatccctgactgggggtcttctgctcctggaggtctggaaact
cttatacctgcagtcccttcactgagtttacaaagccctcactgggttgctgatcctgct
gtatgtgaattagctcaaagaacattggttgtagactctgtattggcttctgatgcacaa
atattttctccacctctgcctgttaaccagtccaacgtcacgtccttggcctttcctcca
aacactgttgttattgagtatacggttgcagtgcagtctacagaaaatattcttccagct
ctctcagataaaattcctgtcgatgcattacagcaagaaccttatgtcccatctgagcca
caacctcccagtcttgacaccaccctactacctgaaacctccacagagttggcacctaca
gagcagttaacaagtcctacagatacattgtccctcactgcttccaccagtgttgctgaa
gcagagaccaatgagattggacaggaatatgtccagtcctctgattgttctaagcaggaa
aacaaagttgaagaagagttacctcccttgcatcctttttgcaagaacttcatgtgcaat
gtttgtgaacaacccttccagtcgatgaagattcttagtcaacacataggtgagcactct
aaagagtggccctacaaatgtgaattttgcgtgcagttgttcgagagtgacacaggtttg
ctggagcaccgttccagttatcatggcattggtaaaatttatgtttgtaaaacatgttct
aaggaatttgcttttctctgcaacttggaacaacatcagcgagatctccatcctggtcaa
gagtgctcacaaaccgaagcagtacatggcaagttaagacctgaaaaccataatagtccc
aaaattgacatggctgatccagtccttccaatcacagaaattaagcaagaagttgacaac
acaacctcaaaagcagagaaggatgccttggagaacacttctgaggagttgttcacgaca
ataaaaatcatggcatctggaggcgtcaaatcgaaaggcccagatgtacgtttaggcatt
aaccaacactaccctagtttcaaaccgcctccttttccatatcacaatcggacaccaact
gggacgacagcagcatcggccaccaacttcaccacccacaacatccctcagaccttcagc
acagccattcgttgcaccaagtgtggtaagagctttgacaacatgcctgaactacacaag
catatcttagcttgcgctaacgctagtgacaagaagcgatacactcctaaaaagaaccct
ataccacttaagcagtttgcgaaagcgcaaaatggggtgttatcacctgcaaggattgtt
aatagtaaacagaatctctctcaaaagctcggacaaccaaaaaaactgcactttcatgaa
tcgtcggttaagatgagtatcctgaataagaagaaatctcatctggtgcaaaggggtaga
cctgctgggggaagaaaagcctttgctcaagacgacctgggcgtttttgcatgtcctcac
tgtaggagagagtttacatacaatgctagtttaaagaaacacgtagcttttagctgcccc
atgagaccggccaatagaatctcctctaaaaaaagaacactcagcattgtttcagcccag
gagaacaatgggagccttcgcagacaaattgcaaatatgagcgcaaagccacaagggtca
gaccacgggccaaaaacaataacaaagaatcagatcattaagcaaaacgcagcagctgat
tccactcaggattttaggcttaaaagatcgaccattctgtcaacatctgtggttcaatcc
agtaaaaaagccaagcctattttgaagagcggctttatgccacagctggcttcaaagcag
atagtcctctcttctgtcgctcaggttaactgtcgggagccaggtgttcggctacatgtt
ttagggagaaaaatggagcagagagtgggtgacataaagatacagcccagaagggaggac
cgtttgtctctgaggttgagagagagagcaggaggacctgttactcgcagtgtgcagcag
gccagcaccacaacaacagtacttaaacagccagacagtcataacatcatcatgcgccct
gtcattctccaggtcaagaaataa
DBGET
integrated database retrieval system
