Garra rufa (doctor fish): 141288089
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Entry
141288089 CDS
T11039
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
grf Garra rufa (doctor fish)
Pathway
grf04010
MAPK signaling pathway
grf04210
Apoptosis
grf04218
Cellular senescence
grf04620
Toll-like receptor signaling pathway
grf04621
NOD-like receptor signaling pathway
grf04622
RIG-I-like receptor signaling pathway
grf04623
Cytosolic DNA-sensing pathway
grf04625
C-type lectin receptor signaling pathway
grf04920
Adipocytokine signaling pathway
grf05132
Salmonella infection
grf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
141288089 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
141288089 (nfkb1)
04218 Cellular senescence
141288089 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
141288089 (nfkb1)
04621 NOD-like receptor signaling pathway
141288089 (nfkb1)
04622 RIG-I-like receptor signaling pathway
141288089 (nfkb1)
04623 Cytosolic DNA-sensing pathway
141288089 (nfkb1)
04625 C-type lectin receptor signaling pathway
141288089 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
141288089 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
141288089 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
141288089 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141288089 (nfkb1)
Transcription factors [BR:
grf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
141288089 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_5
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
141288089
NCBI-ProteinID:
XP_073676304
LinkDB
All DBs
Position
16:18163452..18197178
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AA seq
912 aa
AA seq
DB search
MAGDDPYHTGYMEQIDPFRDDPIWMTTDLTTFPGIHNNNNMRTVDGPYLRIVEQPKQRGF
RFRYGCEGPSHGGLPGASSEKNRKSYPQVKICNYQGTARVVVQLVTNSQEPHLHAHSLVG
KQCDKGICIADLQPKDSSISFPNLGILHVTKKNVSKVLEERMVEAYRMGYNYGIFIHPEI
DALQGEVRMPRDLTDPERNLISSASIHQSKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVI
SDPIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDESGLIWE
AYGDFSPTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDNETSEPKPFTYHPQVID
KEEVQRKRQKTLPNFQDYSGAGGGAGGMFRGGGGGSTAGGGPSGGGGGHFFQGYQTYNNY
GSGYNFSSGMGGGGTTIKHTYQEPVEDSDEDSDSDTDDDPAAGGAVRICTQPKPVDLGVA
SENTDPTEDLELNTTGCLLEPHLAELAGRQAQALFYYAVSGDARMLLAPQRPLMSTQDEN
GDTGLHLGVIHSQTDAVRSLAQVISALSGEDVLNMRNDLYQTPLHLAVLTQQKEAVEALL
EAEVDVTLTDRHGNTILHLAAQQKEDGMLRLLLKHKSVAQLTSIPNTAGLCPLHLAVKAN
SLSCARALLDGGADVEVQELTCGRTALHLATELGNLSLAGCLLLEGNAYVDSITYNGSTP
LHIAAGRDSTKLCALLMAAGADPHKENFEPLFFKDDELCGTCEEDEEEDEGYIPGTSPLN
MATSAEVYDILNGEEYQPTTIVVPPQGDMNSLSSDTKQELCQALEGQTGGWESLANALGL
GILTSAFRLSSCPAGKLLDSYEVSGGTVRELVEGLKHVGNSSAVSLLQDVCKEPEAVHTT
PQLTVWFVKPPD
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggctggagatgatccataccatacagggtacatggaacaaattgacccgttcagagac
gacccaatatggatgaccacggacctgacaacatttccaggcatccacaataataataat
atgaggacagtcgatggaccttatctgcgaatcgtcgaacagccaaaacagaggggcttc
aggttccgctatggatgtgaaggcccctcccacggaggactcccaggggcctccagcgag
aagaacaggaagtcttacccacaagtgaagatctgtaactaccagggtactgcgcgagtg
gtagttcagctggtgaccaactctcaagagccccatcttcatgctcacagcctggtgggc
aaacagtgcgataaaggaatctgcattgccgacttgcagcccaaagattcaagcatcagt
tttcctaacttgggcattttgcatgtgacaaagaagaacgtaagcaaagttttggaagag
aggatggtcgaggcctacaggatgggatataactacggcatattcatccatcctgagata
gacgccctacaaggagaggttcgcatgcccagagatctcacagatcctgagaggaacctg
attagcagtgcatctattcatcagtcaaaggagatggatctgagtgtggtacggctgatg
ttcacagccttcctgcccgacagtgatggaggcttttcccgcagactggaaccggttatt
tcagaccccatctatgacagcaaggccccaaatgcctccaatctgaagatagtgcggatg
gatcggaccgccggctgtgtgacgggaggagaggaagtctatctgctgtgtgacaaagtc
cagaaagatgatatccaggtgcggttttatgaagatgatgagtcaggtctaatctgggag
gcctacggggatttctccccaactgacgtccacagacagtttgccatcgtcttcaaaacg
cctaaatatcgggaccagaacctccagaagcccatctctgtttttgtgcagctaaaaaga
aagtcagacaatgaaacaagcgaacccaagccattcacctaccatccacaggttatagac
aaagaagaagtccagagaaagagacagaagactctgccaaacttccaggactacagtgga
gcaggaggcggagctgggggcatgtttagaggaggagggggtgggtctacagcagggggt
ggtcccagtggaggaggaggaggacatttcttccagggatatcaaacttataacaattat
gggtctggatacaacttctcctcaggcatgggaggaggcgggaccaccatcaagcacaca
tatcaagaaccagtggaagacagtgatgaggacagtgacagtgataccgatgatgatccg
gcggcaggtggggcagtgcgaatctgtacccagcctaaacctgttgatttgggagtggca
agtgagaacacagaccctacagaagatctagagttaaacaccacaggctgtttgttagag
ccgcatttggctgagctagctggaagacaggctcaagctctcttttattacgcagtaagc
ggtgatgcaagaatgcttctggctccacagcgccccctcatgtccactcaagacgagaac
ggagacacgggtttacatttgggagtgatccatagtcaaacagatgccgtgagaagtcta
gcacaagtcatctccgctctttccggagaggatgtactcaacatgaggaatgatctctac
cagactcctttgcacctagcagtgttgacgcagcaaaaagaggcagtcgaagccttgttg
gaggccgaggttgatgtcacgctcacggatcgccatggaaacacaatacttcacctggcg
gctcagcagaaagaggatggcatgctgcgattgctgctgaagcacaaatcagtggcgcaa
ttaactagcatccccaacacagcaggtctctgtccgcttcacctggctgtaaaggcgaac
agtttgagttgtgcgcgggctctgttggatggcggggcagatgtggaggttcaagagctc
acgtgtggccgcacagcacttcacctggccacagaactgggaaacctttccctcgccggc
tgcctattgctggagggtaacgcatatgtagacagcatcacctataatggctcaactcct
ctgcacattgctgcaggacgggactcaaccaaactgtgcgcactcctgatggctgcagga
gctgatcctcataaagaaaactttgaaccgctgtttttcaaagacgatgagttgtgtggt
acatgtgaggaggacgaggaggaagatgaaggctatattcctgggacatcaccactgaac
atggcgacctcagcagaggtgtatgatattctcaatggagaagagtatcagcccacaacc
attgtcgttccaccacaaggtgacatgaatagcttgagctctgacacaaagcaggagctg
tgccaggcactggaaggacagacgggaggatgggagagtctggctaatgctctgggtctt
ggcatcctgaccagcgccttcagactcagctcctgccctgctggaaagctgctggacagc
tatgaggtgtctggaggaacagtgcgtgagctggtggagggacttaagcatgttgggaac
agcagtgctgtaagtttactccaagatgtttgtaaggagcctgaagctgtccacaccaca
cctcagctcacagtatggtttgtaaaacccccagattaa
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