Garra rufa (doctor fish): 141288212
Help
Entry
141288212 CDS
T11039
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked
KO
K16498
protocadherin delta 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
141288212 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141288212 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141288212 (pcdh11)
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141288212 (pcdh11)
Cell adhesion molecules [BR:
grf04515
]
Cadherins
Protocadherins
141288212 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
141288212
NCBI-ProteinID:
XP_073676419
LinkDB
All DBs
Position
16:36768678..36793223
Genome browser
AA seq
1036 aa
AA seq
DB search
MDLASEAYVLVVLLTCLFLMCRAQEKDYTVKEEQPENVRIGNLRKDLNLNLDPDIKLSSA
LQFKPVYKTGDVPLVKVEASTGEIFTTANRIDREKLCSGVFNEKRCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAFDPDIGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQSLDRETKDTFVMKIKVEDGGTPPKSSTAILQVTVS
DVNDNRPVFKDSEVEVNVPENAPMGTSVTHLHATDADLGSNAQIHFSFSNQISPATKRHF
AIDSTTGLITIKQPLDREVNPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDRDADLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIRIVASDSGKPPLNTSAMVLIKIKDENDNVPVFPQPEIQLSIPENND
PGTQLIKISATDADSGSNALIIYSLGPDAPDGFNIDPRSGILSVVKRLDREKQEKYSFTV
FARDNGSTPLQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVKAVDAGQMQTTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVPSTTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSP
RGLFAIDKTTGNITLQEKIVAADQGLHRLVVKVKDLGQPESLHAIALVHLFVNDSVSNAT
FIQEQLRKSLETPLERNIGDNEVTPQTNGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKSKQSGEWVSPNQEGRQIKKKKKKKKRSPKSLLLNFVTIEEPKSDDPTHEHING
TLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVAPKKHHV
IQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGQIHTRQETALKPPLYGT
LCGTGTARSHRIKINL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggacttggcaagtgaggcctatgttctggtggttttactcacctgcctgttcttgatg
tgccgggctcaggagaaggactacaccgtcaaagaggagcagccggagaatgtgcgcatc
ggaaacctgcgcaaagacctaaacttgaacctagatccagacattaaactctcttctgcg
ctgcagtttaaacctgtctacaagacaggtgatgtgcctttggtcaaggtagaagcaagt
acgggagagattttcaccacagccaaccgcatcgaccgtgagaaactctgctccggagtc
ttcaacgagaagcgctgcttttacgagatcgaggtcgccgtgctacccgatgagattttc
cgactggtcaagatccggtttctcatcgaagacatcaatgacaacgcccctctctttcag
tcgacggttatcaacatctccattccagaaaacacagccatcaacagccgctaccctgtc
ccttccgcatttgaccctgatatagggatcaatgggattcaacactacgagcttgtcaag
agtgtgagcgaatttggcctggacatcatcgagacgcctgaaggagacaaatggccccaa
ctcatagtccagcagagccttgatcgggagacgaaggacacctttgtgatgaaaattaaa
gtagaggatggtggcacccctccaaagtccagcacagccattctgcaggtcaccgtctca
gatgtgaatgacaatcggccagtgttcaaggacagcgaggtggaggtaaatgttcctgaa
aatgccccaatgggaacatctgtcactcaccttcatgccacagatgctgatctgggatcc
aatgctcagattcatttctccttcagcaaccaaatctcccctgccaccaaacgacatttt
gctattgacagcacaactggactgattaccatcaagcagccgttggacagggaagtcaac
ccggtgcacaagcttatagtgctggccagtgacggaagctctaccccttcaagggctaca
gtgatagtaaatgtaacagacattaatgacaacgtcccatctatagatacccgttatatc
atgaatcttgttaatggcactgtgctgttgtctgaaaatgccccccttaacacaaaaata
gctctaattactgtgacagacagagatgcagatctgaacggtaaagtgacttgttacacc
gatcatgacgtacccttccgactaaagccggtcttcaacgaccagtttttgctggaaacc
gccgcacccttagattacgagaccactcgagagtatgcgattaggatagtcgcgtctgac
tctgggaaacctcctctgaacacttcggcaatggttctaattaaaataaaggatgagaat
gacaatgtcccagttttccctcagcctgaaatccagctgtcgattccagaaaacaatgac
ccgggcacacagttgataaaaatcagtgcaacagatgcagatagtggttctaatgccctt
attatttatagtcttggcccagatgctcctgatgggtttaacatagatccccgatctgga
atcctttctgttgtcaaaagactggacagagagaagcaggagaagtattcattcacagtc
tttgccagggataatggttctacccctctccaaagcaacgtcaccgtgaagctaatagtc
caagaccaaaatgacaacagtccagcctttacccatcccgagtacaacttctatgtgcct
gagaacctgcctttgtacgggacggtgggtttgatcactgttacggatgcggatgctggc
gacaacgcggttgtcactctctcaatcataaatgggaaggacaatttcatcatcgacccc
aaaaccggggtgatcaaaccaaacattacctttgacagggagcaacaaagttcctacacg
tttgttgtcaaggctgtggatgcgggtcaaatgcaaaccacctcctatgccaaggtcacc
ataaatgttgttgacgtgaatgacaatcgaccggtgtttgtcatcccctcctcgaactac
tcctatgatctagtaccttcaaccaccagccctggatcagtagtgaccagagtatttgcc
attgacaatgacactgggatgaacgctgagctgcagtacagtattatcggaggctcgccg
agaggactgtttgccattgacaaaacgacaggcaacataactctgcaggagaagattgta
gcggcagaccaaggtcttcataggctggttgtaaaggtcaaggacttgggacagccagaa
tccttacatgcaatcgcacttgttcatttgtttgtgaatgatagtgtctccaatgccacg
ttcatccaggaacaacttcgcaagagtttagagactccattggagaggaacattggggat
aacgaggtgacaccccagacaaatggctatgtaattgttgttattgccataatagctggg
actatgaccgttatcttggtaatctttgtgactgctttggtacgctgtcgacagacaccg
aggcacaaagttgtgcagaaaagcaagcagagcggtgagtgggtatcacccaatcaggag
ggtcggcagattaaaaagaaaaagaagaagaagaagaggtccccaaaaagtttgctgctg
aatttcgtaaccatcgaggaacccaagagtgacgatcctactcatgagcacatcaatggc
accttagacctccctgttgaactcgaagagcagacaatggggaagtacaattgggctacc
acaccgactaccttcaaacccgacagtcctgacttagccaagcactacaaatccgcttcc
cctcagccgacattccagatcaaaccagagacccctgtggctcccaagaagcatcatgtc
attcaggaactcccactggacaacacattcgtggtgggctgtgactcactctccaaatgt
tcctccagcagctccgacccctacagcgtttcagagtgcagctgtcaagggggcttcaag
gcacctggacaaatccacaccagacaggagacggcactgaaaccaccactctatggcaca
ctctgtggcacaggtacagctcgctcccacaggataaaaatcaatctctag
DBGET
integrated database retrieval system
