Garra rufa (doctor fish): 141288718
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Entry
141288718 CDS
T11039
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141288718 (pcdh19)
Cell adhesion molecules [BR:
grf04515
]
Cadherins
Protocadherins
141288718 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
141288718
NCBI-ProteinID:
XP_073676987
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All DBs
Position
16:26752241..26812533
Genome browser
AA seq
1094 aa
AA seq
DB search
MHSKDMDFVQMFLCFLLCWTGVDAVYNLKYTVEEELRAGTKIANVTADAKNAGFALGNRQ
PYLRVISNSEPRWVNLSPAGLLITKQKIDRDAVCRQTPKCFISLEVMSNSMEICVIKIEI
IDVNDNAPRFPTNHIDIEISENAAPGTRFPLEGASDPDSGSNGIQTYTITPNDIFGLEIK
TRGDGSKIAELVVEKTLDRETQSRYTFELTAEDGGDPPKSGTVQLNIKVIDSNDNNPVFD
EPVYTVNVMENSPINTLVIDLNATDPDEGTNGEVVYSFINFVSNLTKQMFKIDPKTGVIT
VNGVLDHEELSVHEIDVQAKDLGPNSIPAHCKVIVNVMDINDNAPEIKLLSENSEMVEVS
ENAPLGYVIALVRVSDNDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMY
NLTILAEDSGYPPLRSSKSFAVKVTDENDNPPYFTKPHYQAMVLENNVPGAFLLAVSARD
PDLGMNGTVSYEIIKSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGD
PPLTSNATVRIVVLDVNDNTPVMTTPPLVNGTAEVSIPKNAGVGYLVTQIKADDYDEGEN
GRLTYSISEGDMAYFEIDQINGEVRTTKTFGENAKPSYQITVVAHDHGQTSLSASAYIVI
YLSPDLNAQEQIGPVNLSLIFIIALGSIAVILFVTMIFVAVKCKRDNKEIRTYNCSFLYL
RRVAEYSYGNQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTL
PLGCRRSESTFLNVENQNSRNAAPNHGYHHTFTGQGPQQPDLIINGMPLPETENYSIDSS
YVNSRAHLIKSTSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYADTAVNDVLNMTAPP
NNSQLADQDQSEGFHCQDECRILGHSDRCWMPRVPMPARAKSPEHGRNVIALSIEATTVD
VPHYEDCGTTKRTFATFGKDGPDEERAEQRGRRQTAEPAVCSPKTNGTVREAGNGREAVS
PITSPVHLKSPQSKPPSTYNTLKCRDAERIANHSLLRQPEGKDSEPAMREINTLLQDGRE
KESPGSKRLKDIVL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcattccaaggacatggatttcgtacaaatgtttttgtgctttctcttgtgctggact
ggagtcgatgccgtttacaatttgaaatacaccgtggaagaagagctgcgggcaggcaca
aagatagccaatgtgacggcggacgcgaaaaatgcgggttttgcacttggaaaccgacag
ccttacttgcgggttatctccaattccgagccgcgatgggttaatctgagccccgccgga
ctgctcatcacaaagcaaaaaattgatcgggacgctgtttgcagacagacaccgaagtgt
tttatttcgttggaggtgatgtcgaactcgatggagatctgcgtgattaaaattgagatt
atcgacgtaaacgacaacgcgccccgcttccccaccaaccacattgacatagaaatctcg
gaaaatgccgctcccggtaccagatttcccctagagggggcaagcgatccggactccggg
agcaacggcattcagacgtacacgattacccctaatgatattttcggtctcgagattaag
acgaggggagacgggtccaaaatcgcagaacttgtggtggaaaagactttagaccgagag
acgcagtctcgctatacgtttgaactcacagcggaggatggtggagaccccccaaagtct
gggactgtgcaacttaacatcaaagtcattgactcgaacgataacaaccccgttttcgat
gagccagtatacactgtaaacgtgatggagaattctcccattaacacgttagtcatagat
ttgaacgccacggacccagacgaaggaacgaatggcgaggtggtgtactcattcataaac
ttcgtctccaacctgaccaaacaaatgtttaaaatcgaccccaaaacaggtgtgataaca
gtgaatggcgttttggaccacgaggaactgtccgtccacgaaattgacgtacaagccaaa
gatctgggtccaaattcaatccctgcccactgcaaagtgattgttaatgtaatggacata
aacgacaacgcaccagaaatcaaactcttgtcagaaaacagcgagatggtagaggtgagc
gaaaacgctcccctcggatacgtaatagctctggtgagggtctcagacaatgattcggga
gcgaatggaaaagtgcagtgcagactgcagggcaatgtgccttttagactcaacgagttt
gagagcttctccaccttacttgttgatggccgtctggatagggagcagagagacatgtac
aatttgaccattctagccgaggacagcggataccccccgctcagaagctcgaaatctttt
gccgtcaaagtaacggatgaaaacgacaatcccccgtacttcaccaagccacattatcaa
gccatggtgctcgaaaataacgtcccaggtgcgtttctgctcgcggtgtccgccagggac
cctgacctgggcatgaacggcactgtgtcctacgaaatcatcaaatcggaggtgcggggc
atgtctgtggaatcttacgttacagtcaactcaaacggcgaaatatacggcgttagggct
tttaatcacgaagatacgcgaacctttgagtttaaagtctctgcgaaggatgggggagat
ccaccattgaccagcaacgccaccgtgcgcattgtcgtactggatgttaatgacaacaca
cctgtgatgaccaccccgcccctggtgaacggcaccgcggaggtgtccattcctaaaaac
gctggagttggttatttggttacacaaatcaaagctgatgattacgatgagggggaaaac
ggaaggttaacgtattcaatttcagaaggagacatggcatactttgaaatagaccagata
aacggcgaggtacgaaccacaaagacgtttggggagaatgcgaaaccatcctatcaaata
accgtggtggcgcacgaccacggccaaacttctctatctgcctccgcctatattgtcatt
tatctctctcccgatctcaatgcacaggagcaaatcggacccgtcaacctgtcgctcatt
ttcatcattgccctgggttctattgcagtcatcctctttgtcacaatgatctttgtggca
gtcaagtgcaaaagggataacaaggaaatccgaacatacaactgcagtttcttgtacctg
cgcagggtggcggagtactcctacggcaaccagaagaagtccagcaagaagaagaagctg
agcaagaacgacatccggctggtgccgcgggacgtggaggagacggacaagatgaatgtg
gtgagttgctcgtctctcacctcttcgctcaactacttcgactaccaccagcagactctg
ccgctgggctgcaggcgctccgagagcaccttcctcaacgtggagaaccagaactccagg
aatgctgcacccaaccatggctaccaccataccttcacagggcagggccctcagcagcct
gacctcatcatcaacggcatgccgctgcctgagacggagaattattccattgactccagt
tatgtaaacagcagagcacacctaattaaaagcacgtcaacattcaaggacatggaggga
aacagtctgaaggacagtggccacgaggagagcgaccaaaccgacagcgaacatgacgtt
cagagagggcactacgccgacacagctgtcaacgacgtgctgaatatgaccgcacccccc
aacaactcgcagctagctgaccaagatcagtcagagggtttccactgccaagatgaatgc
cgtatcctgggccactcggaccgctgctggatgccccgggtgcccatgccagcgagagcg
aagtctcccgaacacggccgcaacgtcatcgctctgtccattgaggccaccaccgtggac
gtacctcactacgaagactgtggcaccactaaaaggacttttgccacctttggcaaagat
gggccggacgaggagcgggccgaacagaggggcaggcggcaaacggcggagccggccgtc
tgcagccccaagaccaatggcacagtgcgcgaggccggaaacggccgggaggccgtcagc
cccatcacctccccggtgcacctgaagagcccccaatccaaaccgccctccacctacaac
acgctgaaatgccgggacgcagagcgcatagccaaccacagcctgctgcggcagccggag
gggaaggacagtgagccggccatgcgggagatcaacacgctcctgcaggatggccgtgag
aaggagtcccccggcagcaaacggctgaaggacatcgtgctttaa
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