Garra rufa (doctor fish): 141288801
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Entry
141288801 CDS
T11039
Symbol
pcdh1b
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
141288801 (pcdh1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141288801 (pcdh1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141288801 (pcdh1b)
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141288801 (pcdh1b)
Cell adhesion molecules [BR:
grf04515
]
Cadherins
Protocadherins
141288801 (pcdh1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_4
Cadherin_CELSR2_9th
DUF7171
PepSY
He_PIG
Motif
Other DBs
NCBI-GeneID:
141288801
NCBI-ProteinID:
XP_073677071
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All DBs
Position
16:complement(28715904..28730155)
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AA seq
1065 aa
AA seq
DB search
MMCQSANAMWSRWSAMLVWIFLLLCCSANVGNTIIYQVTEEQPPNTLIGSLASDQGLPDT
GHLYKLEVGAPYLRVDGKTGDIYTTETPIDRETLKDCRNLFEGDPCFLEFEVSITDLMKG
TGPRLIEGRIEILDENDNTPQFSSPVLTLSIPENTHVGALFAIPVATDKDSGSNGIADYA
LTTGPEAANLFSLQVAQDSDEKLPQLIVLGNLDREQRDSYDLNIKVVDGGSPPRQSSALL
RITITDANDNVPKFEKSHYEGELPENSPVGHSVLQVKANDSDMGPNGEVTYSLHQASPVV
QRLLSIDRNTGTIFVKGLVDREDISMLKFYVQAKDNGPQSKSSKALVTITVKDQNDNAPS
IRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDRDEGENAVVTCVVAGDVPFQLRSAS
ETGNDRKRKYFLQTTMLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNSPVF
SPSLYEVEFAEENQPGDKVLDVVATDADSGTNAELTYSITGGSVPEGLFEINPNTGEVRV
MSQLDREQVDHYQFLVAAADKGVPSLRGTATVVVKVLDRNDNDPKFMLNGYSFSVQENMP
PLSPVGMVTVNDHDKGENARVQLSVEPDNGKFMIQNGTNTILSTISFDREKESTYSFRLK
AVDGGDPPRSSYVGITINVLDENDNAPYVTKPSNSSYKFLDPRTSPETHVERVEAEDMDI
GLNSELDFTIVGGNPHGLFRISTEGEITLAKEFTSKHIGLHRLVVKVKDKGTPPRHTTAL
VHIYVNETIGNVSHVEGLVGHSLYTPLEMDIAGDPDYSRDGQSSIIFAVLGGFCVVVLII
AVAMIIRHVVLKENKSGYQAGKKETKDLYAPKPGPKSNKNKKAKKSKAPKPANPSEEDEG
GSLQKGLKFNLMNDSVTDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKK
HQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANSSKYSTKQVGDDFESMAGYHSTGYH
STEYQSPGYQSPGYQSPGYPSPGYHSTGYHSNGYHGNMVWTKGMY
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgccagagtgccaatgcaatgtggtcacggtggagtgccatgctagtgtggatt
ttccttctcctctgttgctctgcaaatgtaggcaacaccatcatctaccaggtgaccgag
gagcagccgcctaacacgctgattggcagtttggcatctgaccaaggtctgccagacacc
ggtcacctttacaaactcgaggtgggcgctccttacctccgtgtggatggcaaaacggga
gatatctacaccacggagaccccgatcgatcgtgagactctcaaggactgtcgcaacctt
tttgagggcgatccttgtttcctagaattcgaggtgtctattacagacctgatgaaaggc
acaggacctcggctcatcgaaggccgcattgagatcttagatgagaacgacaacactcca
cagttctcttcacctgtcttgacattgtcgattccagagaacacgcacgtgggtgcgctt
ttcgcaattcctgtggccaccgacaaggattcgggaagcaatggcatcgccgattacgca
ctaacaaccggccctgaagctgccaaccttttcagcctgcaggtggcgcaagactcagat
gagaaattgccacaactcattgtattgggaaacctggatagagagcagcgagattcatat
gaccttaacataaaagtggtcgatggtggctctccaccccgccagagtagcgccctgctc
aggatcaccattacagatgccaatgacaatgtgcccaaatttgagaagtcacactacgag
ggtgagctcccagaaaacagcccagtgggtcattctgttctacaagtgaaggccaatgac
tctgacatgggacccaatggagaggtaacctacagccttcaccaggcatcaccagttgtc
caaaggctccttagcattgaccgcaacacaggcacaattttcgtcaaaggattggtggat
cgtgaagatatcagcatgctcaagttttacgtccaagctaaagacaatggcccccagtcg
aagagctccaaagcccttgtgactattacagtgaaggaccagaatgacaacgcaccctct
atcaggatccggggcattggccttgtgacgcatgaagatggtgttgctaatatatcggag
gacatgcctgtaggcacagctgtggctctggtggaggtatcagatcgggatgaaggtgaa
aatgcagttgtgacctgtgtggtcgcaggggacgtcccattccagctgcgttcagctagt
gaaacaggcaacgaccgcaagagaaagtacttcctccagacaaccatgctactagactat
gagcggatcaaagattacaggattgaaattgtggcagtagattctggcaaccctgcacta
tccagcacaaattccctgaaggtgcaagtgacagacatgaatgacaactccccggtcttc
tcgccctctttgtatgaggtagaatttgctgaggagaaccagccaggtgacaaggttctg
gatgtggtagccactgatgccgacagcgggacgaatgcagagttgacatacagtatcact
ggtggatcagtccctgaaggactctttgaaattaaccctaacacaggagaagtgcgtgtc
atgagccagttggaccgtgaacaagtagatcactatcaatttctagtcgctgcagctgat
aaaggtgtaccaagcttaagaggaactgccactgttgttgttaaagtgctcgatagaaac
gacaatgaccctaaatttatgcttaatggttacagcttttcagtccaagaaaacatgcca
ccccttagtcctgttggaatggtaacagtcaacgatcacgacaagggcgaaaatgctcgt
gttcaactctctgtagaaccagacaatggcaaattcatgattcaaaatggaacgaacacc
atcctttcaactatttccttcgacagagaaaaggagagcacctacagtttccgacttaaa
gctgttgacggaggtgatccaccacgttcctcctacgttggcattaccattaatgttctt
gatgagaatgacaatgctccatacgtcaccaagccctcaaactcttcatacaagttctta
gatccccgcacaagcccagaaacccacgtagaacgtgttgaggcagaggacatggacatc
ggtttaaattcggagctggacttcactattgtagggggcaacccgcatggcttgttccgc
atctcaacagaaggagagattacattagctaaagagtttacatccaaacacattggtctc
caccgtctggtagtgaaagttaaagacaaaggcacgccaccacgccatacgactgcactg
gttcacatctatgtcaatgagaccatcggcaatgtctcccacgtcgaaggacttgttgga
cacagtctttacactccacttgaaatggacattgcaggagatcccgattattctcgagac
gggcaaagtagcattatttttgcagtcttgggtggcttttgtgtggtcgttctaatcatt
gcagtggctatgatcatcaggcatgtcgtgctgaaggagaataaaagtggctaccaggca
ggcaagaaggagaccaaagacctctatgcgcccaaaccaggacctaagagcaacaagaac
aagaaagcaaagaaaagcaaagctccaaagcctgccaacccatctgaagaggacgagggg
gggagtcttcagaaaggcctaaagttcaacctcatgaatgatagcgtcactgatagccct
aggattcacctgccgctgaactacccccctgggagcccagacctggggcgacactatcgg
tctaattctcctctgccatccattcagctccaacctcagtcaccttctgcctcaaagaaa
caccaggcagtgcaggacctgccagccaccaacacctttgtaggaaccggggacaacaac
tcaacaggctcagaccagtattcggattacagctacaaggccaactcttcaaaatatagc
accaaacaggtaggagacgacttcgaaagcatggcagggtaccacagcacagggtaccac
agcacagagtaccaaagcccagggtaccaaagcccagggtaccaaagcccagggtacccc
agcccagggtaccacagcacagggtatcacagcaacgggtatcacggcaacatggtgtgg
actaagggcatgtattag
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