Garra rufa (doctor fish): 141288810
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Entry
141288810 CDS
T11039
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141288810
Spliceosome [BR:
grf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
141288810
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_16
TPR_12
TPR_MalT
HrpB1_HrpK
TPR_11
DUF5858
DUF7798
Iml2-TPR_39
DUF2981
Motif
Other DBs
NCBI-GeneID:
141288810
NCBI-ProteinID:
XP_073677078
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All DBs
Position
16:23557617..23566557
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AA seq
711 aa
AA seq
DB search
MAAEGTEDLGNNGELTNPPVTELYEPEVADLPKPDVKESAESNADRRDTAAPTASYTVEG
EEEDEGEMPADFERLWKLTSDNPQDFNSWTDLLQYCEQEGHMRACRQALNAFLLRYPLCY
GYWKKFADLERRAGHIDKAEEVCERGLKAIPLSVDLWIHYINLLLGTLNMNLPESTRRIR
SVFEEAVAAAGWDFHSDRLWDLYAEWEKEQGNLKFMTEVYDRVLRVPTQLYNTHYEKLKS
HLTSHPPQDVLSPEEYGKVRNEYKESQIQAKKERTGISAEEEERPPGEEEPADNGKDSED
AVQKMQELLSVSREEVYQQNEAEVRKRWNFEDAIKRPYFHVKPLDRAQLKAWQSYLDWEI
AEAETAAVATEGAAMEGHEGLKQECVAGHKRVLILFERCLIACALYEELWNKYVHYLAAH
GLEDVRNVYRRACQIHLPYKHSIHLHWASFEEKHGNISEAKHILESLEMTVPGLAAVRLR
RVGLERRTGRLDVAEALLKETMEQSKDNPQLHAFYSIKLARFLHKLCRNPARARTVLQEA
IELSPDNCRLYQNLLELEMSGDLRANGGVVLQCVAKAIAAPLSPKTKILFSQRGLQFVED
FGTTVQSVLSMYEEHQKLLKEHDAKRQAENGNNDDTEKMSKMDDASASTVAQTAPPTMPH
IPMTTPPPSMMGGDMSGSYGSYGSWYQQQQYGGYGSYQNPWSQYNQYYPPS
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaaggcacggaagacctgggcaacaacggggaactcacaaaccctccagtg
acagagctttatgaacctgaggttgcagaccttcccaagccagatgttaaggagtcagcg
gaaagtaatgcagaccgaagagacaccgctgccccaacggcatcctacacagttgaagga
gaagaggaggacgagggagagatgcctgcagactttgagagactttggaaacttaccagc
gacaatcctcaagatttcaacagttggactgacctcctgcagtactgtgaacaagaggga
cacatgagagcttgccgtcaagccctaaatgcgtttctgctgaggtatcctttgtgttac
ggttactggaaaaagtttgcggatcttgagagacgggccggtcacattgataaggctgaa
gaggtgtgtgaacgaggtttgaaggccatccctctcagtgttgatctctggatccactac
atcaacctgctgctgggaacactcaacatgaacctgcctgagtcaacacggcgcatccgc
agtgtgtttgaggaggcagttgcagccgctggctgggacttccattcagacaggctgtgg
gatctgtacgccgagtgggagaaggagcagggcaacctgaagttcatgactgaggtctac
gaccgagtactgagggtccccacgcagctctacaacacacattatgaaaaactgaaatct
cacctaacctcgcatccgcctcaggacgtcctgtcccctgaggagtacggtaaggtgaga
aatgagtacaaagagagccagattcaagccaaaaaagaaagaactggtatcagtgctgag
gaagaagagagaccgccaggagaggaagagcctgcagacaatggaaaagactcagaagac
gcagtgcagaagatgcaggagctcctgtcggtcagcagggaggaagtgtaccaacaaaat
gaagcagaagtcaggaagagatggaactttgaagatgctattaaaaggccttatttccat
gtgaagcctctggatagagcccagctgaaagcctggcaaagctatctggattgggagatt
gccgaagctgaaacagcagcagtagccactgaaggggcggctatggaaggccatgaaggt
ttaaaacaagagtgtgtagctgggcacaagagagttctgattctgtttgaacgctgtctc
attgcttgtgcactctatgaagaattgtggaataaatatgtgcattacctggcagcacac
gggctggaggatgtgcgtaatgtgtaccgcagagcttgtcaaattcatcttccatacaaa
catagcatccatcttcactgggcctcgtttgaggaaaaacatggtaatatttcggaggca
aagcatattctagaatcacttgagatgacagtgcctggtttggctgcagtgcgtctgaga
agagtaggtctagagcggagaacaggacgtttggatgtggcggaggcactgctaaaggag
acgatggagcagagtaaagacaaccctcaacttcatgccttctactccatcaaactggct
cgctttcttcacaagctgtgcaggaaccctgccagggcccgcactgttctacaggaagct
atagagctgagtccggataactgtagattgtatcagaatcttctggagctggagatgtca
ggtgacctgcgggctaatggaggtgtcgttctgcagtgtgtggccaaagctattgctgct
cctctctccccgaagactaaaatccttttctcccagcgtggcctgcaatttgttgaggac
tttgggaccacagtacagagtgtgttgagcatgtatgaggagcaccagaagctgctgaag
gaacatgatgcaaagagacaagcagagaatggcaataatgatgacacagaaaagatgagc
aaaatggatgatgcatctgcctcgacagtggcacagactgctccacccacaatgcctcac
attcctatgacgacaccacctccctctatgatgggcggagacatgagcggatcatatggg
agctatggcagctggtaccagcagcaacagtatggagggtatggcagctaccaaaacccc
tggagccaatacaatcagtactaccctcccagctaa
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