Garra rufa (doctor fish): 141288859
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Entry
141288859 CDS
T11039
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf02010
ABC transporters
grf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
141288859 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
141288859 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
grf02000
]
141288859 (abca1b)
Transporters [BR:
grf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
141288859 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
141288859
NCBI-ProteinID:
XP_073677133
LinkDB
All DBs
Position
16:20544976..20586751
Genome browser
AA seq
2313 aa
AA seq
DB search
MSVFTQLGLLLWKNFTYRRRQTLQLLTEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
SLDGFKELINAVKLMQNNTAGFKLKDFLRENETLSTFLQQNASFSHNYVQNILEADVNLE
KVLIKGFGVHLRDMCSTSTLEDFVSIPDERVAKFTQELVCSSPKSWLDQAERHFKSNLDF
LKPIRSDIRTNATDIRLVSKATDNLLESLGSLAVELASMRSWSDLRNEILFLTENATGSP
SLMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFQALFGSHNDSDDEPVSVYDNTTTPYCN
NLMKNMEASPISRMIWRALKPLLMGKILYTPHNPATQKIIHEVNKTFQELGILRDLGGMW
EEARPKVWNFMENSEEINLMRTLLRNNATANFFSAQLAGTQWSVEDVISFLSKHSEDTRP
HGTAFTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMGLLDNRKFWAGIV
FLDVQSNSSELPPHVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFTYLQ
DVIEHSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIK
GVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVLLLKMGNLLPYSDPGV
VFLFLGSFAVVTIMQCFLISRAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSAKV
IASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPMEEDNYNLTTCLILMYFDAFLYGV
MTWYIEAVFPGQYGIPRPWYFPFTKSYWFGESNTNNTAIHGKKGNAGTVCIEEEPTHLEL
GVYIENLVKVYRHGRKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRSELSSIRRSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQILT
DTGLPHKRTSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RAGRTILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNTEPS
LSSCRNSSSTVSFVKKDDNASESSSDAGLGSDQESEAATAIGKQPQNLKIIDRFSVHHII
TESLLRFSICSAGTTWPESPVVPVDVALISSLILKHVPASRMVEDLGHEITYVLPYESAK
DGAFVELFHDLDDRLADLGISSYGVSDTTLEEIFLKVAEDSGVDTEIISDGTLPVPRHRR
HAFGADHQSCLRPLTEDDDFDCNDSDVDPESKETDYLSVSNGKGSYQVKGWSLTRQQFVA
LLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLALNPWMYEEQFTFI
SDDAPHDISTQKLLNALLDDPGFGTRCMEGGPIPEAPCTMGDEEWSTLEVAESVMDIFTS
TNWTMDNPSPACECSCNGKKKMLPECPAGAGGLPPPQMKLSETETLQNLTGRNISDYLVK
TYAQIIGKSLKNKIWVNEFRYGGFSLGARSTQVLPPAEEIDDAISRVREIFQLGKDSGSA
ADRFLKSLSAFINGLDTKNNVKIWFNNKGWHSIGAFLSVMNNGILRANLPPGKDPRQFGI
TAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQF
ISGVQPYLYWLANFLWDMCNYVVPATLVILIFVCFQQKAYVSATNLPVLALLLFLYGWSI
TPLMYPASFLFKIPSTAYVVLTSVNILIGINGSVSTFVMELFGNNEIGGINDILKNVLLI
FPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLEWDMVGKNLFAMAVEGAVFFIITVL
IQYRFFFEPKSLSAKLSPIGEEDEDVARERQRIMNGAGQGDILELRQLTKVYKRKQKPAV
DRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTKGEAFLAGKSILREIDEVHQNMG
YCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKLGLVKYVDKNAGSYSGGN
MRKLSTAISLIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEA
LCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVGGPDPDLQPVMKFIESELPGSNLR
EKHRNMLQYQLPSSLTSLAHIFSILAKNKEFLRIEDYSVSQTTLDQVFFNFAKDQSDDHS
DSSIRRKETSVNMALLSPLSTKENMEKPIESFV
NT seq
6942 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctttactcagctgggtctgctgctgtggaagaacttcacctacagaaggagg
caaacgctccaactgctgacggagattgtgtggcctctctttattttcttcatcctgatc
gcagtgaggttgaactacccgccttatgaacaacatgaatgtcactttcccaacaaagcc
atgccctcagcaggcaccctgccctggatccagggcatcgtctgcaatgccaacaatccg
tgcttccgacacccaacccctggggaatctccaggagttgtcggaaactttaatgattcc
ataatctcacggctgttttctgatgccaagaagatcttactgtacagtcaaaatgacaag
agcttagacggattcaaggagcttatcaatgcagttaaactcatgcaaaacaacacagct
ggtttcaagctgaaggacttcctgcgtgaaaatgaaaccctttccacgttcctccagcag
aacgcctccttttcccataattatgtgcagaatattctggaagcggatgtgaatcttgaa
aaggtgctgatcaaaggttttggtgttcatctgagagacatgtgcagcaccagcacactt
gaggattttgtgagcatcccagacgaaagagtggcgaaattcacccaggaactcgtctgc
agctctcccaaaagctggctggaccaggccgagagacacttcaagtctaatttggatttc
ctcaaacctattaggtcagacataaggactaatgccactgatatccgtctagtttccaaa
gctacagacaaccttctggagagcctgggatcactggctgtggagctggccagtatgagg
agctggagtgacctgcgaaacgagatcctgtttctgacagaaaacgccactggttcacca
agtctgatgtaccaggcagtgtcccgtattgtgtgtggacacccggaaggtggcggcctt
aagatcaaatccctcaactggtacgaggacagcaacttccaggcactgtttggcagccac
aatgacagtgatgatgagccagtttcagtctatgacaacaccacaactccatactgtaac
aacctgatgaagaacatggaagccagtcccatctctcgaatgatctggagagcattgaaa
cctctcctgatggggaagatcctctacacgccacacaaccctgcaacacagaagatcatt
catgaggtcaacaagacattccaggagctcggaattctacgagatttaggcggaatgtgg
gaagaagccagaccgaaggtttggaacttcatggagaacagtgaagaaattaatctgatg
cggacgcttcttcgaaacaatgccactgctaatttctttagtgcccagttggctgggact
cagtggagtgtggaggacgttataagctttttgtctaagcactccgaggacacgcgtccc
cacggaacggcgtttacgtggcgggacgtcttcaatgagaccgaccaggccattatgagc
atatcccgtttcatggagtgtgtaaacctggataaacttgaacctgtgagcacagaggag
aaactagtgaatgaatccatgggtcttctggataacagaaagttttgggcgggaattgtg
ttcctggacgttcagtccaacagctctgaactccctccacacgtcaattacaaaatccgc
atggacatcgacaatgtggagcgtacaaacaagattaaagatgggtattgggatcctggt
cccagggctgatccgtttgaggatttgcgttatatttggggaggatttacttaccttcag
gatgtgattgaacacagcatcatcagagcggttactgggaccaaagagaagactggagtt
tacatccaacagatgccttatccatgttatgtggacgatattttccttcgcattatgagc
cgttccatgccgcttttcatgactctggcctggatgtactcggtggccatcatcatcaaa
ggagtcgtctacgagaaggaggcccggctcaaggaaaccatgaggattatgggattggac
aatgggatcctgtggtttagttggttcattagcagcctcattcctcttctcatcagtgca
agcctgctcgttcttctactcaagatgggtaatctcctgccctatagtgaccctggggta
gtcttcctcttcctgggctcattcgctgtggtaaccatcatgcagtgttttctgatcagt
agggcgttcgcacgagccaacctggcagcggcttgtggcggcattatttacttcaccctc
tacctgccgtatgtgctctgcgtggcttggcaagactacgtgggcttcagcgccaaagtc
atagctagtttactgtctccagtagcgtttggatttggctgtgaatattttgccctgttt
gaggagcagggagtgggcatccaatggaataacctcttctccagtcccatggaagaagac
aactacaacctcaccacctgcctcattctcatgtactttgatgccttcctgtatggggtc
atgacctggtacattgaggccgtgttcccaggccagtatggcattcccaggccgtggtac
ttccctttcactaaatcctactggtttggagaaagcaacacaaacaatactgcaattcat
ggaaagaagggcaatgctggaactgtttgcattgaagaggaacccactcaccttgaattg
ggagtttacattgagaatcttgtgaaggtctatcgtcatggcagaaagctagcagtcgat
ggcttgacacttggcttctatgaggggcagataacttctttcctaggtcacaatggagct
ggaaaaaccaccacaatgtctatccttactggccttttccctcccacctctggcacggca
tatatcatgggcaaagatattcgctcagaactcagttccatcagacggagcctcggagtt
tgtccacaacacaatgtcctcttcagcatgttgacagtagaagagcacatctggttctac
gctcgtctgaagggattgtctgaggaggaagtgaaggctgagatggagcaaattctgact
gatactggccttccacacaaacgcacatccaggaccagccagctgtcaggtggtatgcaa
agaaagctctcagtagccctggcttttgttggagggtcaaaggttgttattttagacgag
cccactgcaggtgtggacccttacgctcgaagaggcatctgggaccttcttctgaaatat
cgtgcaggtcggactatccttctttcaacccatcatatggatgaagcggatattctgggc
gatcgcattgccatcatatcccatggaaagctttgttgcgtgggctcttcgctctttctt
aagactcaattgggaactggatactatcttaccttggtgaagaaaaacactgagccttct
ctcagttcttgcaggaactcgagtagcactgtgtcctttgttaagaaagatgacaatgca
tctgaaagcagctcggatgctggtctaggtagtgatcaagagagcgaagccgccacagca
attggtaagcaacctcaaaacttaaaaataattgatagattttcagttcatcacattata
actgaatctttactgaggttttcaatatgttctgcaggaactacatggcctgaatctccc
gttgttcctgttgatgtggccctcatctccagtctaatcctgaagcatgttcctgcttcc
cgcatggtggaagacctcggtcacgagatcacatacgtgttgccgtacgagtctgccaaa
gatggtgctttcgttgagctcttccatgacctggatgatcgtctcgctgaccttggcatt
tcgagctatggtgtctcagatactacacttgaagagattttccttaaagtggcagaggac
agtggagttgacactgaaatcatctcagatggaactttgccggtgcccagacatagacga
cacgcatttggcgctgaccaccagagctgcctcagacccctaactgaagacgatgacttt
gactgcaatgactctgatgttgatccagaatcaaaagagacagactatttgagtgtttcc
aatgggaaaggatcatatcaggtgaaaggctggagtttgacgaggcagcagtttgtggct
ttattgtggaagagatttctttatgctcggcgctcaaggaaaggcttctttgcacagatt
gttcttcctgctgtgtttgtgtgcatcgctctggtattcagtctcattgtgccaccattc
ggaaaatatcccagtttggctcttaatccctggatgtatgaagaacagttcacattcatc
agtgatgatgctccacatgatataagcacacaaaaattactcaacgctttgttagatgat
cctggctttggaacacgatgcatggaaggaggaccaattcctgaggctccctgtacaatg
ggcgatgaggaatggtctactctagaagtggcagaaagcgttatggacattttcacatcg
acaaactggaccatggacaacccatcgcctgcttgtgagtgcagctgtaatggcaaaaag
aagatgctcccagaatgccctgctggtgcaggtggactgccgcctcctcagatgaagctc
agtgaaaccgagaccctccagaacctaaccggacgaaacatctcagactatctagtgaag
acctacgcacagatcattgggaaaagcttgaagaacaagatttgggtgaatgaatttaga
tatggaggattttcattgggcgctagaagcactcaggtacttcctcctgctgaggaaatc
gatgatgccatttctagagtcagggaaatctttcaactggggaaggactctggatcagct
gctgaccgtttcttgaaaagcctgtctgcctttatcaacggtctggacactaaaaataat
gtgaagatatggttcaataacaagggctggcacagtattggagccttcctcagtgtgatg
aacaatggtatcttgcgtgccaacttaccacctggcaaagatccccgtcagtttggcatc
actgcgttcaaccatccgctcaatctgaccaaggaacagctttctcaagtggccctaatg
actacctcagtggatgtgctggtttccatctgtgtgatcttcgccatgtccttcgtcccc
gccagcttcgttgtcttcctcattcaggagcgagtgaataaggccaagcacatgcagttt
ataagtggagtgcagccatacctttactggttggccaactttctctgggatatgtgcaat
tatgtcgttcctgctactctggtgatcctgatcttcgtgtgctttcaacaaaaagcctac
gtctctgccaccaacttgcctgttcttgcccttctactgtttctttatggatggtccatc
actcctctcatgtacccagcttcattcctcttcaaaatccccagcaccgcttacgtggtc
ctcactagcgtcaacatcctcattggaatcaacggcagtgtgtccacttttgtcatggag
ttatttggaaataatgagattggtggcattaacgacatcctgaagaacgttttactcatc
ttcccgcatttctgcctgggtcggggtctcatcgacatggtgaagaatcaggccatggct
gacgctctggagagatttggtgagaaccgtttccgttctccattggagtgggacatggtg
ggcaagaatctttttgctatggctgtggaaggagcggttttcttcatcattacagtcctt
atccagtaccgtttcttctttgaacccaagtctttaagtgccaagttgagtccgattgga
gaggaagatgaggatgtggccagagagaggcagagaatcatgaatggagctggacaggga
gacattctagaactccgacaactcactaaggtgtacaagcggaaacagaagcccgctgtc
gatcgtctctgtgttggcattcctccaggagagtgttttggcctgcttggtgtcaatgga
gctggaaagaccagcacttttaaaatgctgaccggagactctgtggtcaccaaaggagaa
gcattcttggctgggaaaagtatactcagagaaatagatgaagtacatcagaacatgggc
tactgccctcagtttgatgccatcaatgatctgctgacaggacgggaacacctggaattc
tacgccatcctacgaggtgtacctgagaaggaagtttgtgaggtggcagagtggggaatc
cgtaaactgggcctcgtgaagtacgtggacaaaaacgcaggaagctacagcggtggcaac
atgcgcaaactctccaccgctatatcgctcattggagccccaccagtggtcttcctggac
gagcccaccactggaatggaccccaaagcacgacgagcactgtggaactgcatccacagc
gtcatcaaagaggggcgctctgtcgtacttacctcacacagcatggaagaatgtgaagcg
ctgtgcaccaggatggccatcatggtgaacggcaggttccgttgtctgggcagcgtccag
cacctgaagaacagatttggcgatgggtacaccatcattctgagggttggggggccagat
cctgacctgcagccggtgatgaagtttattgagagcgagttaccgggaagcaacctgaga
gaaaaacacagaaacatgctgcaataccagcttccctcctccctcacctccctcgctcac
atcttcagcatcctcgctaagaacaaagagtttctcaggatagaggactactccgtgtcc
cagaccactctggaccaggtattttttaactttgccaaggaccaaagtgacgaccactcg
gacagctccattcgtcgtaaagagacatcggtcaacatggccctcctgagccctctgtct
actaaagagaatatggagaagccaatagaaagctttgtgtga
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integrated database retrieval system
