Garra rufa (doctor fish): 141289034
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Entry
141289034 CDS
T11039
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141289034 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
141289034 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141289034 (thoc2)
03041 Spliceosome [BR:
grf03041
]
141289034 (thoc2)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
141289034 (thoc2)
Spliceosome [BR:
grf03041
]
Complex C
Other components
EJC/TREX
141289034 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141289034 (thoc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
141289034
NCBI-ProteinID:
XP_073677322
LinkDB
All DBs
Position
16:3830965..3962388
Genome browser
AA seq
1559 aa
AA seq
DB search
MAALILPSDWIKNWDKSGKNEFLQFFQDLAGKPSSQEFVKDLQTALYELCWHVIQGNLKV
DVAASLLADVMELRDDMPSVLADVFCILDIETGCLEEKHKRDHFTQLVGACLICVPDGML
KERLDPETLESLGLIKQAQQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDL
SGNLTSHIVLENIKSLIGCFNLDPNRVLDIILEVYECRSEHDEFFIPLIKSYMCEHQTLC
HMLGFKFKFHQEPNGETPSSLYHIAAALLQHNLIALEDLYVHLLPLDSNIVEEHKREILE
AKQIARKLTMVVVPSEKAEDKEKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWQHAQSIM
DQMPAFYATSHKAIAIALCQLLHLTVEPLYRRAGVPKGAKGGLMTPLRSKQAPRPAEIFE
DLLRDVFTMLCYLGPHLSHDPILFAKIIRLGKSFMKEYQSESRQDTKDKMDSLLSCFLSI
ADQVLLPSLSLMECNACMSEELWGFFKLFPYQHRYRLYGQWKNETYGNHPLLVKIKAQTV
DRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLITPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTVEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHELALPLCLLMAQQRNGVVFSEGGEKHLKLVGKLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSVDVLCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
HKYIAACEQVMTPIHEAVVSLHLPKVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVNKL
KIQIKAIDENTEMPLNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCIFPRCVFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIY
TVASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRASGFDGGNKAD
QLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALEC
RVHKICQEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATPGTLQNGPG
NTGKPAATAAANAGKAEEGAVEDSDKSKDKSQAAQKTASKNSAAANKVSSSNGSSTPNST
KGSKEKEDKEKTTKEKKEKKEKNPGSTPEAKAGGKDKQKEERSKEEKPTDTKEKTPKAEK
DKRKDDKKEEKSKIDGKSAEKEWSKEREVSNDSKTKEGSKVEKNAGAGSLKSLVPRSEVE
SERAEQKRRKLDTHSSPSHSSAVKDNLNDFKDSASKHHPNHSTVLPKSKEKDDEKKESDK
SRDRSKEREKKEDRKDRKRDYTNSDREMSQEAKRRKDENGMSSSKHSKSASPSESPHSND
KDNSKRSKSTSKDKSDLAKPEKTSGGKKESRHDKEKSEKKRDSTGAKEEKKHHKSEKHR
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgatcctcccgtctgactggataaaaaactgggacaaatccggcaaaaat
gagtttttacagtttttccaggaccttgcagggaaacccagcagtcaagagtttgttaaa
gatctgcagacagccctgtatgagctctgctggcatgttatccagggcaatctgaaggtg
gatgtggctgccagtctcctggctgatgttatggagctgagggacgacatgccttctgtt
ttagctgatgttttctgtatattagatatcgagacgggctgtttggaggagaaacacaag
cgagatcattttacccagctggttggagcctgtttgatctgtgttcccgatggtatgctg
aaggagcgattagatccagaaacgctggagtctctggggctgatcaaacaggctcagcag
ttcaaccagaagattgtcaaaatcaagaccaaactattttacaaacagcagaagttcaat
ttgttgcgcgaggagaatgaaggttatgctaagctgatcgcggagctcgggcaggatctg
tccgggaatctcaccagccacatcgtccttgagaacatcaagtcattaataggatgtttc
aatctggacccgaaccgtgtgctggacatcatcttagaagtgtacgagtgtcgctctgaa
cacgatgagttcttcatcccgcttatcaagtcctacatgtgcgagcaccagaccctttgc
cacatgctgggcttcaagttcaagttccaccaggaaccaaatggagaaacaccatcatct
ttgtaccacatcgccgcagctcttcttcaacacaacctcatcgctcttgaagacctctat
gttcatctcctcccactggattccaacattgtggaagagcacaagagagagatcctggag
gccaagcagatcgcccgcaaactcaccatggtggtcgtcccctccgaaaaggcagaggac
aaggagaaagaaaaggagaaggaagaggagaagaatgagaagcctcctgataaccagaag
ctggggctgctggaggcgctgctgaggatcggtgactggcagcacgctcagagcatcatg
gatcagatgccagctttctacgccacctcccacaaggccatcgccatcgcactgtgccaa
ctgctccacctgactgtggagccgctctaccgcagggctggagtccccaaaggtgccaaa
ggcggtttgatgacacctctacggagcaaacaggcaccacggccggctgaaatctttgaa
gatctcctcagggacgtcttcaccatgctgtgctacctgggccctcacctgtcccatgac
cccatcctgtttgcaaagatcatacgactaggcaagagtttcatgaaagagtaccaaagt
gaaagcaggcaagacaccaaggacaaaatggactctctgctgagctgttttctcagtatt
gctgatcaggtgctgttaccgtctctctcgctcatggagtgcaacgcctgcatgtccgag
gagctctggggcttctttaaactcttcccctaccagcacaggtatcgtctctatgggcag
tggaagaatgagacgtatggcaatcatccactcctggtgaagatcaaggctcagacggta
gacagagccaaatacatcatgaagcgactgactaaggagaatgtgaagccctcaggaagg
cagattggaaagttaagccacagcaaccccaccattctctttgattatattctgtctcag
atccagtggtacgataacctcatcactccagtggtggactctctcaaatacctcacctct
ctcaactatgatgtgctggcctattgcattattgaagctttagccaacccggagaaagag
aagatgaaacacgacgacacgaccatttcttcatggctgcagagtctcgctagtctttgt
ggagctgttttcaggaagtatcccattgagttagccggtcttctgcaatatgtgaccaac
cagctgaaagcaggcaagagttttgacctactgatcttgaaggaggtggtgcagaagatg
gcaggaattgagatcacagatgaaatgactgtggagcagctggaggccatgacaggcgga
gaacagctcaaagcggagggtggctactttggacaaatcaggaacactaagaagtcgtca
cagcgtctgaaggatgctcttctggaccatgagctggcgttaccgctgtgtctcctgatg
gctcagcagaggaacggtgtggtcttctctgaggggggagagaagcatcttaagctcgtg
ggaaagctttacgatcaatgtcacgacacgcttgtacagtttggtggtttcttggcatct
aacctcagtacagaagactacatcaaaagggtgccgtcagtcgatgtcctctgcaaccag
ttccacacgccacacgacgccgccttcttcctgtctcggcccatgtatgcccatcagatt
ctgtccaagtatgacgaattgaaaaaggcagagaagggcaacaggcagcagcagaaggtc
cacaagtacatcgcagcctgcgagcaggttatgacccccattcacgaggctgtcgtgtct
cttcacttgcccaaagtgtgggatgatcttcgacctcagttctacgccaccttctggtcc
ctcaccatgtacgacctggcggtaccgcacaacgcctacgaccgggaggtcaacaagctg
aagattcagatcaaggctatcgatgaaaacacagagatgcccctcaacaaaaagaagaaa
gagaaagaacgatgcacagcgctgcaggacaagctgcaggaagaggagaagaaacagctg
gagcatgtgcagagagttctgcaccgcctcaaactggagaaagacaactggttacttgcc
aaatccactaagaatgaaaccatcactaagttcctgcagctctgcatcttcccccgctgc
gtcttctcagccattgatgccgtttactgcgctcgcttcgtggagctggtacaccagcag
aagacgcccaacttctgcactctgctctgctacgacagagtgttctctgatatcatctac
acggtagcgagctgcacagagaacgagtctcgtcgctacggccgttttctctgctgcatg
ttggagactgtgactcgatggcacagcgacagagccgtctatgagaaggagtgtggaaat
tatcctgggttcctgactattttccgagccagtggttttgacggagggaacaaagccgat
cagctggactatgagaatttccggcatgttgtccacaaatggcattacaagttgactaaa
gcgtcagttcactgtctggagacgggcgagtacacccacatccgcaacatcctgatcgtg
ctaaccaagatcctaccctggtaccccaaggtgctgaacctgggccaggctctggagtgc
cgcgttcacaagatctgccaggaagagaaagagaagaggcccgatctctatgcgttagcc
atgggctactctggccaattgaaaggcaggaaagtgcacatggtgcctgaaaatgagttc
caccataaggagcagccagtgcgcagcgccacgcctggcactctgcagaacggacctggc
aacacgggcaagcctgccgccactgccgctgccaacgctggcaaagccgaggagggggcc
gtcgaggactcagataaatccaaggacaaatctcaggcggctcagaaaactgccagcaaa
aacagcgccgcagccaataaagtgagcagcagcaacggaagcagcacgccaaacagcact
aaagggagcaaagagaaggaagataaagagaagaccacaaaggagaaaaaggagaagaaa
gaaaagaacccaggaagcactccagaggccaaggcaggagggaaggataaacagaaggag
gaaagatccaaggaggagaagcccactgacactaaggagaagacgcccaaggctgaaaag
gacaagaggaaggatgacaagaaggaggagaagagcaagatcgatgggaagtccgctgaa
aaagagtggtccaaggaacgcgaggtgtccaacgacagcaagacgaaggaaggcagcaag
gtggagaagaacgctggggccggaagcctgaagtccctcgtgcccagatccgaagtcgag
tctgaacgggcagagcaaaaaagacgaaagcttgacacacactcgtcaccatcgcactcc
tctgcagttaaggacaatctcaacgacttcaaggactcagcctcaaagcaccatcctaac
cacagcacagtcctgcccaagagcaaagagaaggacgacgagaagaaagagtctgacaaa
tccagggaccgttccaaagagagggagaagaaagaagaccggaaggaccgaaaacgagac
tacaccaacagcgaccgcgagatgagccaggaagccaagcgccgcaaagatgaaaatgga
atgagctcctccaaacacagcaagagcgccagtccctccgaatcgccacactccaacgac
aaggacaacagcaagcgctccaagtccaccagcaaggacaagagcgatctggccaaaccg
gagaagacctctggaggcaaaaaggaatccaggcatgacaaagagaaatcggagaagaag
agagacagcaccggcgctaaagaagagaagaaacaccataaatcggaaaagcacagataa
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integrated database retrieval system
