Garra rufa (doctor fish): 141289164
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Entry
141289164 CDS
T11039
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141289164 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141289164 (arid1ab)
03021 Transcription machinery [BR:
grf03021
]
141289164 (arid1ab)
03036 Chromosome and associated proteins [BR:
grf03036
]
141289164 (arid1ab)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Helix-turn-helix
ARID
141289164 (arid1ab)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141289164 (arid1ab)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
141289164 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
141289164
NCBI-ProteinID:
XP_073677372
LinkDB
All DBs
Position
17:15857948..15986979
Genome browser
AA seq
2263 aa
AA seq
DB search
MAAQVATLNTSPPAELKKPEREPQDEALLAEKQLEGKEPRADGGSPGQKELQDGADVGNA
AAAAAGGGGAGDPDMKNGNGNPSRVNNNNSQNDSDGNSHPGMAPHHPGAFPPPPYNYNQH
YNRPPFHQHGGQQSPGMAGPAVMDPYPPNSHEHGYPNHFNNYSAFPNRTPYHQGQGYGMN
SPRNSQPAAAGGQPGKQQQQPPPGGTNASVNVTPMAAAASYNNQRYNMGTPQPTSTPTLN
QLLTSPSSTRSYQNYPASEYGAQEGAAKGPGDASQYGVGHPAWQQRSHHPPPMSPGNTGQ
ALTRTQPPGPMDQVGKIRGQHYGGGNPYSQQQGPPPGSQQGAPYPGQGYGPPGPQRYPMG
MQGRTPGSMSGIQFGQQMSYGQHGPGGYGQNQGGYYGQQGPSPHVGPQQSPYPQQPSTGA
TSQPPYSQQPPGPPHGQSGPTYGQPQGPHAPSQGQPPYSQTPQSQSGQPPYSQSQGPPQS
QGPSQGQPGSQPGYSQPPSGPGQPPQQQGPSQQQQGPPQSQPAASAPPQSSQQASGQGQP
SPYSQTPPLQTQQPQQQQSPFQRFPPPPQQELSQDSFSSQSSAPSSNQPMVSGKGGPEES
MQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPG
IRGPSPSPVGSPASGPASRTGPLSPGTMPGNQMPPRPSSVQSDGMLHSSMGQDRVYMRNP
QMPYGSPQPGSTLSPRQSSGGQMHSGIGSFPQNNSMGNYGPQSGQYGPQGYPRPPGYGGM
PNANYPGGPAMSGSMNPMAAQGGGGPYGGMPPGRMAPGQMGTRPYGPGMAPNMAPNMGGM
PPQVASGMCPPPGMNRKPQDPAAAGMHHGPSNSIHRPPGYPNMNQGMMGAGSPYAPPMNS
MQGMMNQAGPYPMPGNMSNNSAGMAPSPEFGMDKLNQPQKLNNKVDGTPKTESKKKSSSS
TTTNEKITRLYELGPEPERKMWVDRYLAFAEEKAMGMNNLPAVGRKPLDLFRLYVSVKEI
GGLTQVNKNKKWREIATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDFFNND
PKKNQAKVQPPSPAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPMPGPRSS
VNLQDPFADGGDPAFSRRNSVTPNSGYQPGMGAPEMMGRMGPYEPNKDPFGGMRKAGEQF
MSPGQGPNSGIGEQYNRGPPGPMGNMPMGQRQQYPYGPGYDRRPESSMGPDGSMGPQPNM
MPSDAGMYSPNRPPQQQRLDSYSNQYPGQGAPPSGPYPNQQSGMYPQQQPNYTQKRPVDG
VYGPPAKRHEGDIYPFSGQQQGPQAPGGPQSQPDMYNQYNAYPGSDRRPPGPQSQFPFGF
GRERGPNAGGPNSQPSMPPQMMGSSMSGSMPSVPDGPQGPMWPGRNEMNFPNYHNRQGPP
GVPSQSQGYHGMNRSEDMMPSDQRMNHEGPWAGHVNQRQPPYGPGASGPPMSRPLQSNYQ
SSQNHIPQVPSPAPMPRPMENRTSPSKSPYMHTGMKIQKAGPPVPASHIAQPSVQPPMIR
RDVAFPPGSTEASQPILKPRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLY
DDNSISNFNLNQLPGFLELVVEYFRRCLIEIFGILKEYEVGDPGQRTLIDPDAIDPEMSD
EEGPEAEQMEEEDEEDDEDVESNTVQTPQVQVKQEMEESMPIQKSSDKTDVEEKEGEDIS
CKDHLRSSTPLQDTSASQERPKQASKFDKLPIKILRKKDPFVIGRTSKLGRRQAFDSGLI
HWSVGGGDTTEHIQTHFESKMELLKHRKRVPVNVESRKKASQVVETVTEDAEKAQTNEEQ
QPQPSPEPSSESKSTTTASTSTSITATFDDVLSARQGSVTEEVVRGNQDCDKEKNAFLLG
IDLVQQSRNIKILEDEPHSKDETPLCTHSEWQDSLARRCICVSNIVRSLSFIPGNDLEMS
KHPGLLLLLGRLVLLHHWHPERKQAPVTYEKEEEEDEGVSCERDEWWWDCLEVLRENCLV
TLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEAIDPFPTLGLNGTLSPQRLVLETL
SKLSIQDNNVDLILATPPFSRLEKLYGFLVRMVGDRKVPVCREMAVVLLANLAQGDSVAA
RAIAVHKSSVGNLLGFLEDSLAATQFQQSQGSLMHLQGAHFEPTSVDMMRRAARALHALA
KVDENHSEFTLYESRLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccactctcaacactagcccgcccgccgaactcaagaagccggag
cgggagccgcaggacgaggcgctgctcgcagagaagcagctggaaggcaaggagccccgc
gccgacggcggatccccaggccagaaggagctgcaagacggggccgatgtgggaaacgct
gctgccgctgctgctgggggaggaggagcaggcgaccctgacatgaagaacggcaacggg
aacccgtccagggtgaacaataacaatagccagaatgattccgacgggaacagccacccc
ggcatggctccccaccatccaggcgccttccctccacctccatacaactacaaccagcac
tacaaccggcccccttttcatcaacatggcggacaacaaagccctggcatggcagggccg
gcggtgatggacccatacccgcccaattcgcacgagcacggctacccgaaccacttcaac
aactacagcgccttccccaaccggactccgtaccaccagggccagggctacggcatgaac
tcgccgcgaaacagccagccggcggcggccggggggcagccaggcaagcagcagcagcag
ccgccgccaggaggaactaacgctagcgttaacgttaccccgatggctgctgccgcttcc
tacaacaaccagaggtataacatgggaacccctcagcccacatccaccccgacgctcaac
cagctcctgacctctcccagctccacgaggagctaccagaactaccctgctagtgagtac
ggcgcccaggaaggggctgccaagggaccgggggacgctagccagtacggtgtgggccat
ccggcctggcaacaaagaagccatcaccctcctcccatgagcccgggaaacactggacaa
gccctcaccaggacccagcctccaggcccgatggaccaggtcgggaaaattcgagggcag
cactatggtggtggaaacccttattctcagcagcaggggcctccccctggctcccagcag
ggtgctccttacccaggacagggttacgggcccccgggaccccagaggtaccctatgggc
atgcagggccgcactcccggaagtatgagcgggatacagttcggacaacagatgagctat
gggcagcatggcccaggaggttatggtcagaaccaaggtggctactacggacaacagggc
ccttcacctcacgtaggcccccagcagtctccatacccccagcagccctccaccggagca
acctcccagcccccttactcccagcaaccccctggtcctccccatggccagagcgggccc
acttacgggcaacctcagggcccccacgccccctctcagggccagcctccatactcccag
actccacaatcacagtcaggacagcctccctactcccaatcccagggtccccctcagtca
cagggtccgtctcagggccagccagggtcgcagcccggatactcgcaaccaccttccggt
cctgggcagcctcctcagcaacagggaccctcgcaacagcagcagggcccgccacaatca
cagccggccgcctcggcgcccccacagtcatcccagcaagcttcaggacagggtcaaccc
tcaccctactcccaaacccctccactgcagactcaacaaccgcagcagcagcagtcgccc
ttccagcgctttcctcctccaccacagcaggagctgtctcaagactccttcagctctcag
tcttcagctccttcctccaatcagccaatggtgtccggaaagggtggtccagaggagagc
atgcaaggacgaccttccagccttcctgatttgtctggctccatcgatgatctccccaca
ggaactgaaggtgcattgagtccgggtgtcagcacatcaggagtgtccagcagtcagggg
gaacagagcaacccggcacagtcgcccttctcaccccacacctctcctcacttgcccggg
atccgtggcccgtcaccctcacctgtgggctcacccgccagcggcccggcctcacggacg
ggacccctctcacccggaaccatgcctggaaaccagatgccccccagaccctcaagtgtc
cagtcggatggtatgttacattcctccatgggacaggatagagtatacatgaggaaccct
cagatgccgtacggctctcctcaacccgggtcgactttatccccacggcagtcatctgga
ggtcaaatgcatagtgggataggttccttcccacaaaacaactccatgggcaactatggg
ccgcagagtggtcagtacggaccacaaggttacccgaggccgccaggttacggaggcatg
ccgaacgccaactatccgggtggtcctgccatgagtggctctatgaaccctatggcagcg
cagggtggaggtgggccgtacggagggatgcctccaggacgcatggctccggggcagatg
ggtacgaggccgtatggccctggcatggcccccaacatggcccccaatatgggtggcatg
cctcctcaggtggcgtcaggaatgtgtccgccgcccgggatgaacagaaagcctcaggat
cccgcagcagcagggatgcaccacggcccatccaactccatacacagaccgcctggatat
cccaacatgaaccagggaatgatgggagccgggtctccgtatgccccgcccatgaacagc
atgcagggtatgatgaatcaagcgggaccgtaccccatgcccggaaacatgtccaataac
tctgccggcatggctcccagtccagagtttggcatggacaagctcaaccaaccccagaag
ttgaataacaaagtggacgggacgcctaagaccgaatcgaaaaagaagtccagttcctct
accaccactaatgagaagataacccgactgtacgagctgggcccggaaccggagcgcaaa
atgtgggtggatcgttaccttgcgtttgctgaggagaaagccatgggcatgaacaatctc
cccgcggtgggacgcaagcccctcgacctcttccgcctctacgtgtccgtcaaagagatt
ggcggcctcactcaggtgaacaagaataagaagtggagggaaatagccactaacctgaat
gtgggcacatccagtagtgctgccagctctctgaagaaacagtacatccagtgtctgtac
gccttcgagtgcaagatcgagcgaggggaagacccgccacccgacttcttcaacaatgac
cctaaaaagaaccaggccaaggtccagcctccttcaccagctggatcaggatcgttacag
ggtcctcagacacctcagtcgaccagcagttctatggccgaaggtggagatctgaagccc
cctacacctgcctcaacaccgcacagtcagatgccccccatgcctggtcctaggagcagt
gtgaatttgcaggacccgtttgctgatggtggggatccggctttttccagacgtaactct
gtgacccccaattcaggttatcagcctggaatgggtgcaccagaaatgatgggccgcatg
gggccttatgagcccaataaggacccgttcggtggtatgagaaaagcgggtgagcagttc
atgagcccaggtcaaggcccaaacagtggcataggtgaacagtacaaccgaggcccccca
ggacctatgggaaatatgccgatgggccaaagacaacagtacccatacggtccaggatat
gacagaagaccagaatcaagtatgggcccagatggcagtatgggtccacagcctaacatg
atgccttcagatgcagggatgtactcacctaaccgacccccacagcaacagagacttgat
tcttacagtaatcaataccctggccaaggtgctccccctagtggaccatacccaaaccaa
cagtcaggaatgtacccacaacagcaaccgaattacacacagaagagaccagttgatggt
gtttacggtcctcctgcaaagcgtcatgaaggagacatctaccctttcagtggtcagcag
cagggaccccaggccccaggtggacctcagtcccaaccagacatgtataatcaatataac
gcctatccaggctcagacagacgcccaccaggcccacaaagccagtttccttttggcttt
gggcgagaacgaggacctaacgctggtggtccaaactcccagccctccatgccaccacag
atgatgggtagctccatgagtggctccatgccttcagtccccgatggaccccagggtccc
atgtggcctgggcgtaacgagatgaacttcccaaactaccataatcgccagggcccccct
ggtgtcccatcccaaagtcaaggctaccacggcatgaatcgttctgaagacatgatgcct
tcagatcagcgcatgaaccacgagggaccttgggctggccatgttaaccagcggcaaccc
ccatacgggcctggagcctctgggccaccaatgtccagacctcttcagtccaactatcaa
tcctcccagaaccacattccacaagtgcccagccccgcacccatgccaagaccaatggag
aacaggacctcacccagtaagtctccatacatgcacacggggatgaaaatccagaaggct
ggacctccagttccagcatcccacattgcccagccgtcagtccagccccctatgattcgg
agagacgtggcattcccaccaggttcaacagaggcctcgcagcccattttgaaaccgcgg
cggcggcttaccatgaaggatataggaacaccagaagcctggagagtcatgatgtccctc
aaatcaggcttgttagcggagagcacttgggctttggataccattaatattcttctatat
gacgacaacagcatttctaactttaatctgaaccagcttcctggcttccttgagctcgtt
gttgagtatttccgaaggtgcctcattgagatctttggcatcttgaaagagtatgaggtt
ggcgaccctgggcagcgtaccctaattgacccagatgccattgaccctgagatgtctgat
gaagaggggccagaagcagagcaaatggaagaggaggatgaggaggatgatgaagatgta
gagagcaacactgtgcagacgccacaggtccaggtcaagcaagagatggaggagtctatg
ccgatccaaaaatccagtgacaagactgatgtagaagagaaggaaggagaggatatttca
tgcaaagatcatctcagatcatccaccccattgcaggacaccagtgcctcccaggagagg
ccaaagcaggctagtaaattcgacaagcttcccatcaagatactgaggaagaaagacccg
tttgtgattgggcgcactagtaaattgggtcggcgacaagccttcgacagcggtcttatc
cattggagtgtaggtggtggtgacaccacagagcacatacaaacccattttgagagcaag
atggagctcttgaagcatcggaagcgggtgcccgtgaatgttgagtcacgtaagaaggcg
tctcaggtagtggagactgttacggaggatgctgagaaggctcagacaaacgaagagcag
caacctcagccatccccagaaccatcgtccgaaagtaaaagcactacaacagcaagcacg
tcaacgagtataacagccacctttgacgacgtgctgtcggctcggcaaggctccgtgacg
gaggaagtggtccgaggcaaccaggactgcgacaaggagaagaacgcatttctccttggc
atcgatcttgtgcaacagagtcgcaacatcaagatcctggaggatgagccgcacagcaag
gacgagaccccactgtgcacgcattcggagtggcaggactccctcgctcgccgctgcatc
tgcgtttccaacatcgttcgcagtctttccttcatacccggtaatgatctggagatgtcg
aagcatccaggacttttgctgttacttggccgactggtgttgttgcaccactggcaccct
gaacgcaagcaagccccggttacctacgagaaggaggaggaggaagacgaaggggtcagc
tgcgagcgagacgagtggtggtgggactgtctcgaggtcctgcgggaaaactgcttggtc
acgttagccaacatctcaggccagctggacctgtccatctaccctgaaagtatttgcctg
ccgctgctggacggcctgctccactgggccgtgtgcccttcggcggaagcgatcgacccc
ttccccacgctggggctcaacgggacgctgtctccccagagactcgttctggaaaccctc
agcaagctaagcatccaggataacaatgttgacctcattctggctacgccgcctttcagc
cgcttggagaagctctacggcttcctcgtgcgcatggtcggcgaccgcaaagtgcccgtc
tgccgggagatggcggtggtgctgctagcaaacctggcgcaaggcgacagcgtcgcggcc
cgggccatcgccgtgcacaaaagcagtgttgggaaccttcttggcttcttggaggacagt
ctcgcagccacccagttccaacagagtcagggctcgttgatgcacttacaaggtgcgcac
ttcgagcccaccagtgtggacatgatgcggcgggcggcacgtgccctgcacgcccttgct
aaagtggacgagaaccactcggagttcacgctgtacgagtcacggctactggacatatcg
gtgtccccgctcatgaactctttggtgtcccacgtaatctgtgacgtactttttctgatc
ggccagtcatga
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integrated database retrieval system
