Garra rufa (doctor fish): 141289436
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Entry
141289436 CDS
T11039
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
grf00535
]
141289436
Proteoglycans [BR:
grf00535
]
Extracellular matrix (ECM) proteoglycans
Others
141289436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4959
VWA_3
Big_5
Motif
Other DBs
NCBI-GeneID:
141289436
NCBI-ProteinID:
XP_073677633
LinkDB
All DBs
Position
17:43904874..43977239
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AA seq
1820 aa
AA seq
DB search
MQVRVLLILILTSVFITNAQVPMPRRLRFKELSSNTLGVTWKEPKGAFDSYRLLYSTDSG
DERELIVSKSEPKAVVKGFDRRKEYSVKITAVRGAEQSKALMGRYSGSGSGSEVSDVSAP
LNQQDTSATQQDNEINEVDVFTCRTPAVADIVILVDGSWSIGRINFRLVRMFLESLVRAF
SVGSEHTRVGLAQYSGDPRIEWHLNTHSTKESVIDAVKNLPYKGGNTLTGLALTHILENS
FKPESGSRPDVPKIGILITDGKSQDDVLAPAQRLRDAGIELFAIGVKNADENELRAIASP
PEETHVYNVADFGVMSSIIEGLTRSVCERVSELSREISGGFLGPLNAPSNLVTSEVTARS
FRVSWTPAAGPVEKYRVVYYSSSESRPEEVVVNGDENSVVLRYLNSLTEYQITVFAIYSN
AASEALRGSETTLALPTVSNLELHDITHSTMRARWREAEGVSGYMILYAPLTEGDPADEK
EVKVSDSVTQVELEGLTPATEYTVTVYALYGEEASDPMTAQETTLRLTPARNLRISEISH
SSAKLAWDSASRKVKGYRIVYVKSDAVETNKVEVGPVTTLLLRNLTSLTEYTVAIFALYD
EGQAEPLTDSFTTSEVPLPLNLRSSDVSTDSFRVMWQDAASDVSFYRLAWRSPAGGETKE
VLINDKSNWFVITGLKPLTEYEVSLSAIYRDESESEPVEISETTVARTTTVTTTTVKTTT
AVQRLAIRNLQLSDVTTYSMRVSWDPLGPNVRQYRVSYISTRGDRAEQTAMVPAAQTSLL
LQPLLSDTEYRVSVSAVYGDGDGPRITRVARTLPLSAPSNLRVSEEWYNRFRISWDAPPS
PTMGYRIVYQPTSASGRALETFVGDDINTMLIVNLLSGTEYSVKVIATYTTGSSEALSGR
AKTLYLGVSNLSTYQVRTTSMCVQWQPHRHANLYRLILQSPINGEKQEVKLSGSTSRHCF
NDLTPNTQYTISIHAQLQDTEGPAVTTTQTTFPVATAPPTTPSTTPPPPTLPATKEVCRA
AKADLVFLVDGSWSIGDDNFQKIIRFLYSTAGALDQIGPDGTQVAIAQFSDDARTEFKLS
SHDNKENLLDAIQRISYKGGNTKTGRAMQHVKDSVFTAVGGARRGVPKVLVVLTDGRSQD
DVLQVSQEIQAEGYIVFAIGFADADYGELVSIASKPSERHVFFVDDLDAFRKIEEKLITF
VCEAASATCPSVPMSGSTLPGFRMMETFGLVDHLYSSVSGVSMEPGTFNSYSSYRLGRDA
LLTQPTRFIHPEGLPSDYTITMLFRLLPETPQEPFALWEILNNNNEPLVGVILDISGKTL
TYFNTDYNGDFQTVTFEGPDIQKLFYGSFHKLHIAVSKTSALVMVDCKPAGEKSVNAAKN
ISTDGVEVLGRMVRSRGSRDNSAPFQLQSFDIVCSTSWAQRDKCCELPSLRKEADCPSLP
RACTCTQDSKGPPGPVGPPGGPGIRGARGDRGEPGPVGPVGPVGDAGVPGAQGAPGPPGP
SGRSIRGPMGAPGETGQKGDAGPPGSQGVPGSPGPAGRDGPPGARGLQGQDGPQGRVGAP
GSIGGPGAPGAPGENGPPGPTGDQGPPGPPGSKGEKGERGEVQSTSSVQAIARQVCEQLI
QSHMARYNSILNHIPSQPVSIRTVPGPPGEPGRQGSPGPQGEQGPPGRPGFPGTNGENGL
PGARGPLGEKGEKGSPGVGVQGPRGPAGPPGPPGEGRTGSTGPSGRPGNPGSPGRPGVPG
AVGPPGPPGYCDQNACLGYNVGGEXSSSIQSLSGLTAQSESGSGLRKVQNEGVHQLSRCR
QMLNVCRLMIRVALDESICW
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttcgagtgctgctgatcctgatactgacatcagtgttcatcacaaatgctcaa
gtgccgatgcccaggaggctgcgtttcaaagagctgagctccaacacgctcggcgtaacc
tggaaggagccgaagggagcgtttgacagctacagactcctgtacagcactgactcagga
gacgagcgtgagctgatagtgagtaaatctgagcccaaagcggtcgtcaaagggtttgac
cgcaggaaagagtacagcgtgaagatcacagccgtcagaggagctgagcagagtaaagcg
ctgatgggcagatactccgggtcagggtcagggtcagaggtgagtgacgtcagcgctccg
ctcaatcagcaggacaccagcgccacacagcaggacaatgagatcaatgaagtggacgtc
ttcacatgtaggactccagccgtcgctgatattgtgattctggtggacggatcgtggagc
atcggtcggattaatttccggttggtgcggatgtttctggaaagtctagtcagggccttc
tcggtcggatctgaacacacgcgtgttggtttagcacagtacagcggggatccgaggatc
gagtggcatctgaacactcacagcactaaagagtccgttatcgatgctgtgaagaatctg
ccctataaaggaggaaacacacttacaggtcttgctctgacgcatattctggagaacagc
ttcaaacctgaatctgggtccaggcctgacgttcctaaaattgggattctgatcacggat
gggaaatctcaggatgatgttcttgctcctgctcagagactcagagacgctgggattgag
ctctttgctatcggagtgaagaatgcagatgagaacgagttgagagccatcgcctctccg
ccggaggaaacacacgtgtataatgtggctgatttcggcgtgatgagctccatcatagag
ggactcaccaggagcgtctgtgagcgtgtctctgaactcagcagggagatcagcggtggg
ttcctgggaccactgaacgctcccagtaaccttgtgacctctgaggtcacggccaggagc
ttccgtgtgtcatggacccccgctgcagggccggtggagaagtacagagtggtgtattat
tcatccagtgaatccagacccgaggaggtggtggtgaacggtgatgagaactctgtggtg
ttgcggtacctgaactctctgacggagtatcagatcactgtgttcgccatctacagcaat
gcagccagtgaagctctgagaggcagcgagaccaccttggcattgccgacggtcagtaat
ctggagctgcacgacatcactcacagcaccatgcgtgcacgctggcgggaggcagaaggg
gtttctgggtacatgatcctgtacgcgcctctgacggagggcgaccccgcggatgagaag
gaggttaaagtgtctgactccgtgactcaggttgaactggaaggcttaactcctgcaacc
gaatacacagtgaccgtttacgccctgtacggagaggaagccagtgaccccatgacggcg
caggagaccacgcttcggctgactccggctcgtaatctgcgcatctcagaaatcagtcac
agctccgctaaactcgcgtgggactcggcgtctcgtaaggtcaaaggttaccgtatcgtt
tatgtgaagtcggacgctgtggagaccaataaggttgaggtcggaccggtcactactctg
ctgctacgtaacctgacctctctgacggagtacaccgtcgccatctttgccctgtatgac
gaaggacaggcagaaccgctgacggacagcttcaccaccagtgaggtccctctgccgctg
aatctccgcagcagcgacgtgtccaccgatagtttcagagtgatgtggcaggacgccgcg
tctgacgtctccttctacagactcgcctggagatccccggcaggaggagagaccaaagag
gttctcatcaatgataagtccaactggtttgtcatcacgggtctgaagcctttgactgaa
tacgaagtttctctgtctgcgatctacagagacgagtctgagagcgaaccagtggagatc
agtgagaccacagttgccagaacaacaacagtcaccacgacgaccgtcaaaacgacaaca
gccgtgcagcgtctggccatcaggaatctgcagctgagcgatgtgacgacctacagcatg
cgtgtgtcatgggatccgctgggtccaaacgtgcgtcagtacagagtgtcatacatcagc
acgcgaggagaccgcgccgaacagacggccatggttcctgctgctcagacctcgctgctc
ctgcagcctctcctgtcggacacagagtaccgcgtcagcgtctcagccgtctacggcgat
ggggacgggccgcgcatcacacgcgtcgcacgaacactgcctctctccgctcccagtaac
ctccgcgtgtccgaggagtggtacaaccgcttccgcatcagctgggacgcgccaccctcg
cccaccatgggctaccggatcgtctatcagcccacatcagcgtccggccgcgcgctggag
acgttcgtgggcgacgacatcaacaccatgctgatcgtcaatctgttgagcgggacggag
tacagcgtcaaagtcatcgccacctacaccacgggatccagcgaggccctgagcggacga
gccaaaacactgtatctgggagtgagtaacctcagcacgtatcaggtgcggaccaccagc
atgtgtgttcaatggcagccgcaccgccacgccaacctctaccgcctcatcctgcagtcg
cccatcaacggtgagaaacaggaagtgaagttgagcggctccacatccagacactgcttc
aatgatctgacaccaaacacacagtacaccatcagcattcacgctcagctgcaggacaca
gagggacccgccgtcaccaccacacagaccacatttcctgtggccacagctccgcccacc
acacccagcaccacgccccctccgcccacccttcccgccactaaagaagtgtgtcgagcc
gctaaagcagatctggtgtttctggtggacggatcctggagtatcggagacgacaacttc
cagaagatcatccgcttcctgtacagcaccgccggagcgctggaccagatcggcccggat
gggactcaagtggccatcgctcagttcagtgacgacgctcgcaccgagttcaagctcagc
tcacacgataataaagaaaacctgctggacgccattcagaggatctcctataaaggagga
aacacaaagacaggccgggcgatgcagcatgtgaaggactctgtgttcacggcggtgggc
ggagccagaaggggcgtgcccaaagtcctggtggtgctgacggacggacgttcccaggac
gacgtgctccaggtttcccaggagatccaggcggaaggctacatcgtgtttgccatcggt
ttcgccgatgccgattacggcgagctggtgagtatcgccagcaaacccagcgagagacac
gtgttcttcgtggacgatctggacgctttcagaaagattgaagagaagctcatcaccttt
gtttgcgaagctgcatcagcaacgtgtccatcagtacccatgagcggcagcactttacca
gggttcaggatgatggagacgttcggtctggtggatcatctgtacagcagtgtgagcggt
gtgtccatggagccggggaccttcaacagctacagcagctacagactgggcagagacgcg
ctcctcacgcagcccaccaggtttatccatccggagggtctgccgtcagattacaccatc
accatgctcttccgcctgctccccgaaaccccgcaggagccctttgcattgtgggaaatc
ctcaacaacaacaacgagccattggtgggagtcattctggacatttcaggaaagacgctg
acgtacttcaacacggattataatggtgattttcagacggtgacgtttgagggtccagac
atccagaagctcttctatggcagttttcataagctgcacatcgctgtcagtaagacgtct
gctctggtgatggtggactgtaaaccggcgggagagaagtctgtgaacgcggccaaaaac
atcagcactgacggcgtggaggttctgggacggatggtgcgatccagaggatccagagac
aactctgctccgtttcagctgcagtcctttgatatcgtgtgcagcacatcatgggctcaa
cgagacaaatgctgtgagctgcccagcctgaggaaggaagctgattgtccgtctctccca
cgcgcctgcacctgcactcaggacagtaagggccctcctggccccgtcggacccccagga
ggtccgggcatcagaggggccagaggagatcgaggtgaacccggccctgtgggtcctgtg
ggtccagtaggggacgctggtgttccaggtgctcagggggctcctggtcctccggggccc
agcggacgctccatcagaggccctatgggggctccgggtgagacgggacagaagggtgac
gctggtcctccaggatcgcagggtgttcccggttctccagggcctgcgggacgcgacggg
cctccaggagcgagggggctgcagggtcaggacggtcctcagggacgggtgggagcacca
ggatccatagggggtccaggagcaccaggggccccgggagaaaatggccctccaggaccc
acaggagaccagggtcctccgggacccccgggatccaagggagagaagggtgagcggggt
gaagtccagtccacgtcttctgtccaggccatagccagacaagtgtgtgagcagctgatc
cagagtcacatggcacgctacaattccatcctgaaccacattcccagtcagccggtgtcc
atccgcaccgttcccggaccgccgggagagccggggcgacaggggtctccaggacctcag
ggagagcaggggccgccgggacggccgggattccccggcactaacggagagaacggcctg
ccgggagccagaggacctctgggtgagaagggagagaagggcagtccaggtgtaggtgtc
cagggacccagaggacctgctggaccaccaggacctcctggtgaaggcagaacaggaagt
acaggtccatctggtcgccccggtaaccccggcagtccaggcagacccggcgtaccagga
gctgttggtccacccggcccgcccggatactgcgaccagaacgcctgcctcggctacaac
gtgggaggtgagtgatcttcctccatccagtctttgtctggactcacagcacagagtgaa
agcggatccgggctcagaaaggtccagaatgaaggcgttcatcagctttcacgctgcaga
cagatgctcaatgtgtgcagactgatgattcgagtcgctttagatgaaagcatctgctgg
taa
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