Garra rufa (doctor fish): 141289536
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Entry
141289536 CDS
T11039
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141289536 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141289536 (cnot3b)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141289536 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141289536 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
141289536
NCBI-ProteinID:
XP_073677749
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Position
17:31739210..31769455
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AA seq
888 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNMIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRMIERHRYHI
RMLETILRMLDNDSIQVDAIRKIKDDVEYYLDSSQDPDFEENEFLYDDIDLEDLPLPLVA
TSPGHGEDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDDKKRGRSIDSEISQSPIKNG
NPSSSLSSSSSLSSSSSGASSNSLISMANVASSISSASGSSSLLGSLGGSLQNSGSYSSA
TQQQTQQSQQQHQPKNSVSSLSAAILAASNSSTFLPTSTSTSPPNTSTSAPTTPISLSQP
PLGLGLSSSLGLGKGTSVTSGANQMTGLVLSGMPASLNSLTGFLSGSTPAPYAQAAAAGC
VGSGLSASIATNISSTNSSGIVTSVGTNGSLGSTSLLGSGPGILGLGSTQSAVEPLPLVA
PSSVGGVLTSGSNVGVIGSNGGTSGTGNAVGSAVLPRPPSGPKQNGGTSYSAVVADSTSD
SPLNSASQSQNSQSSSLNSSTNQPKDSGSSLLGSMTLPPSSPSPSYSESKAGGGSLLNGP
HSYTQAADTIKPQEPPSSLKSMAERVAQGSGLEGELSALHMPSDIFPSSTAPSGTPAAPQ
SALSEVSIPPSLGVCPLGPVPLSKEQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPT
LPFHHQVPPAHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMW
FQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaacttcaaggtgaaatagacagatgtttgaaaaaagttgcagaa
ggagtagaacagtttgaggacatttggaaaaagctccataatgctgccaacgccaaccaa
aaagagaaatatgaatctgacctcaagaaagagattaaaaaattacagcgtctccgtgac
cagattaagacatgggtcgcctccaatgagatcaaagacaaaagacagctagtagagaat
cgcaaactcattgagacgcaaatggagcggtttaagattgtggaacgggagaccaaaaca
aaagcgtactctaaagaaggactcggcctcgctcagaaagtcgatcctgcacagaaagag
aaagaagaggtcggccagtggctaacgaacatgatagacacgttaaacatgcaagtggac
cagtttgagagcgaggttgaatcactgtctgtccagaccaggaaaaagaaaggagacaaa
gagaagcaggatcggattgaggagcttaaacgaatgatcgagaggcaccggtatcacatc
cgcatgctggaaaccatccttagaatgctggacaatgactctatacaggtggatgccatc
cgcaagattaaagatgacgtcgagtactaccttgactcttctcaggatcctgactttgag
gagaatgagtttctctacgatgacattgatttagaggacttgcccctgccactagttgcc
acatctccaggtcacggagaggacgagatcttccagcactccagttccacaccgacctcc
acaacgtcgtcatctcccatacctccctctccagctacttgcactacgaattcggaagat
gacaagaaaagaggtcgttcaatagacagtgaaatcagccagtcacctatcaagaacgga
aatccatcttcatctctatcctcttcttcctcattgtcatcctcatcctcgggagcctct
tcaaactctttgatctccatggcgaatgtcgccagcagcataagctcggcatcagggagc
agcagcctcttaggcagcttgggcggctcccttcagaactctggcagctatagttcagca
acccagcaacaaacacagcaatcccaacagcagcaccagcccaaaaattcggtctcctct
ctttccgccgccatcttggctgcctccaacagcagtacctttctcccaacatccacctcc
acgtcacctcccaacaccagcacatcagcccctacgacgcccatctcgctaagccagcct
ccgttgggattgggcctttcctccagtctgggccttgggaaggggacgtcggtgactagt
ggcgcaaaccagatgaccggtctggtcctttcagggatgccggcatccttgaacagcctg
actgggtttttgagtggatccactccggcaccttatgcacaagcggccgccgcaggttgc
gtgggcagcgggctgtcagcgtcgattgcaacgaatattagcagtacaaactccagtgga
atcgtaacctcagtggggactaacggaagtctaggctccacaagcctcttgggctcaggg
cctggtattttgggtcttgggtctacacagtccgctgtggagcctttacctttggtggct
cccagctctgtgggaggcgtactgacctcagggagcaacgtgggagttatcggaagcaac
ggaggaacctctgggacaggaaacgcagtgggaagtgccgtgctaccacggccacctagt
gggccgaaacaaaacggcggtacaagttatagtgctgtggtagcagacagcacatcagac
tcccccctcaacagtgccagccaatcacagaacagccaatcctcatccttaaattcctca
acaaatcagcctaaggacagtgggtccagccttctggggtcgatgacactgccgcccagc
tcgccttcaccgtcatacagtgagagtaaagcaggcggtgggagcctgctcaacggcccg
cactcatacacacaggctgccgacaccatcaagcctcaggagcctccgagctctttaaag
tcgatggcagagagggttgcccagggctcagggttagaaggggagctgtctgcactacat
atgccaagtgatatattccctagctccacggccccttcaggcactcctgcagctcctcag
tctgctctgtcggaagtgagcatccccccatcattgggcgtgtgtccactgggccccgtc
cccctctccaaagagcaactctaccagcaagccatgcaggagtccgcctggacgcacatg
cctcacccgtccgactccgagaggatcaggcagtacctgatgaggaacccctgcccaaca
ctgccttttcaccaccaggtgccacctgctcactctgacactgtggagttctaccagaga
ctgtctacagagaccctcttcttcatcttttattacttagaggggacaaaagcgcagtat
ctagcagccaaggccttgaaaaaacaatcatggaggttccacaccaaatacatgatgtgg
ttccagaggcatgaggagcccaagaccatcactgatgagtttgagcaggggacatatatt
tactttgactacgagaaatggggccagaggaaaaaggaaggatttacattcgaatacagg
taccttgaagaccgggacctccagtga
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