Garra rufa (doctor fish): 141289559
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Entry
141289559 CDS
T11039
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
grf Garra rufa (doctor fish)
Pathway
grf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141289559 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141289559 (smarcc1b)
03036 Chromosome and associated proteins [BR:
grf03036
]
141289559 (smarcc1b)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141289559 (smarcc1b)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
141289559 (smarcc1b)
PBAF complex
141289559 (smarcc1b)
GBAF(ncBAF) complex
141289559 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF919
Motif
Other DBs
NCBI-GeneID:
141289559
NCBI-ProteinID:
XP_073677774
LinkDB
All DBs
Position
17:complement(28993767..29013727)
Genome browser
AA seq
974 aa
AA seq
DB search
MATQTLGSASAGPTTSQAGCSSSLSRRMDGGPCCKFWESPEIISQLEAVRSWIGKHYKKY
VQTDAPSSKSLSGLVIQLLQFQEDSFGRRANKPTFTKLPAKCFHELRPAGALCHILGSAY
KFKTEQGWRRFDLQNPSRVDRNVEMFISVEKTLIQNNLLSRPVVYLSPDLEQKQALKLKD
IVVRHQGTVTEDKSQATHQIYPSPSTADEEEWLRPVMRLDRQMMVHWGMCPDSYDSLVSA
SDVDGEVEEPPNPDRCWKVNTKWVLDTDTYNEWMNEEDYEIDENGNSMSFRRRIYQSTEE
QKPAKKRRRSPSPPSSESKKKGGKKSSSGVYKRRGQPEEAEPEEDLTKDMEDPTPVPNME
EVILPKNVNLKKDSENTPVKGGIMADLDDQDEDLLTGVRDEDEQREFGRGMEGEESATEQ
THHIIVPTYASWFDYNCIHQIERRALPEFFNGKNKSKTPEIFLAYRNFMIDTYRLNPQEY
LTSTSCRRNLTGDVCALIRVHSFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDTPSG
LVPLQHRPLQVSASQHMLHFPEKLREKPSDLQNFGLRSDIYAKKHPKSKGASAGREWTEQ
ETLLLLEALEMYKDDWNKVSEHVGSRTQDDCILHFLRLPIEDPYLENSEASMGPLAYQPV
PFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRAREEAPPEIFTASFQKAQRVGH
NLDPAFTLQTGSIAGLDPDHSEKTDGSGLEAMNTEYEQHEKLEGDSILGEGERVKNEEKE
ESEGERGEESTAEESFDMSLTQGDGEEMKRRGELELVEGNIATAAAAALASAATKAKHLA
AVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHLE
QVKYAEMKARQNVEQPQQAGATQSGSSTAFNPLHHGRSVGSAGTGQVMGARHSGAPNGMY
QTPPSSQTDGATPM
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggctacccaaacgctaggatctgcttctgcgggacctacgacgagtcaagccggttgc
agctcttcactgagccgaagaatggacggtggaccgtgttgtaaattttgggaaagcccg
gaaataatctctcagttggaagcggttcgcagttggattggaaagcattataaaaagtat
gtacagaccgatgctccctccagcaagtctctctctgggctggtcatccaactgctgcag
tttcaggaggattcgtttggccggcgagcaaacaaaccaacctttacaaaactcccagcg
aagtgttttcacgagctaaggccagccggtgctctctgccatattctgggatcagcgtac
aagttcaagacagaacagggctggagacgctttgatcttcagaacccatccagagtggat
cgcaatgtggagatgttcatctctgtggagaaaactctgatacagaataacttattaagc
agacctgtggtgtacctgtctcctgatcttgagcagaagcaagctctaaaactcaaagac
attgttgtgcgacaccagggcacagtgacagaggacaagtcacaagccacccaccaaata
tacccatcaccctctacagcagatgaagaagaatggcttaggcccgtcatgcgattggat
cggcaaatgatggtgcattggggcatgtgtccagacagttatgactcacttgtatcagca
agtgatgtagatggagaagtagaggaacctcccaacccagacaggtgctggaaggttaat
accaaatgggttctcgacacagacacatataatgagtggatgaatgaggaagattatgag
attgatgagaatgggaatagcatgagttttaggcgccgtatctaccaaagcacagaggaa
cagaaacctgcaaagaagcggcggcgctccccttctccaccatcttctgagtctaagaag
aaaggaggaaagaaaagtagctcaggtgtttataagaggcgtggtcaaccagaggaggcg
gagccagaggaggacctcacaaaagacatggaggatcccacgcctgtccctaacatggag
gaggtcattctgcctaaaaatgttaaccttaaaaaagacagtgaaaacactccagtcaaa
ggaggcattatggctgatttggatgaccaggatgaggacctgcttactggtgtcagagat
gaggatgagcagagggagtttggccgtgggatggagggggaggagagtgccacagagcaa
acacatcacatcattgtgcccacctatgcctcctggttcgactacaactgtattcatcag
atagagagacgagctcttcctgagttcttcaatggaaagaataagtccaaaacaccagaa
atatttcttgcataccgcaacttcatgattgatacataccggctaaaccctcaggagtat
ctgacctcaacctcctgtagacgaaacctgacaggagatgtttgtgcacttataagggtt
cattcatttttggagcagtgggggttgatcaactaccaggtagatgcagaaagtcgaccc
ctccctatgggcccacctccaacaccacactttaatgttcttacagacacaccttctgga
ctcgtcccactacagcacagacccttgcaggtttcagcttctcagcatatgttgcatttc
ccagagaaattgagagaaaaaccatctgatctgcagaactttggtctacggtctgatatt
tatgctaagaaacatccaaagagtaaaggcgcaagtgctgggagagaatggacagaacag
gaaacactcttgcttttggaggctttggagatgtataaagatgactggaataaggtgtca
gaacatgtgggcagtcgcacacaggatgactgtatacttcacttcttacggttgcccatc
gaggacccatacctagagaactctgaagcctcaatgggtcctctggcctatcagcctgtc
cccttcagccagtcagggaaccctgtaatgagcactgttgctttccttgcatctgtggtc
gacccccgagtagcttctgcagccgccaaggcagctttagaggaattctcaagagcaaga
gaagaggccccaccagagatattcaccgccagctttcagaaagcacagagagttgggcat
aatttagatccggcctttacactccaaacgggcagcattgcgggacttgatcctgaccat
tcagaaaagactgatgggagtggtctagaagctatgaacactgaatatgagcagcatgaa
aagcttgagggtgacagcatcttgggagagggagagcgtgtgaagaacgaggagaaagaa
gagagtgaaggagagaggggagaggagagcacagcagaggagagttttgacatgagcctt
acccaaggggatggggaggagatgaagaggaggggggagcttgaactggtggagggaaac
atcgctacagctgctgctgcagcactggcctctgcagctaccaaagcaaagcacttggct
gcagtagaagagaggaaaattaaatctctggtggctctgctggttgagacgcagatgaaa
aagttggagatcaaactgagacactttgaagagctggagaccattatggatcgagaaaaa
gaggctctggagcagcagaggcagcagttgttatcagaaagacagaacttccacttggag
caggtaaaatatgctgagatgaaggcacgacagaatgtggaacagccgcaacaagcagga
gccacacagagcggcagtagtacagcattcaaccctcttcaccacggtcgttcggtaggc
agtgctggtaccggacaggtcatgggtgctcgacactctggagctcccaatggcatgtac
caaactccaccgtcctcgcagactgatggggccacacccatgtaa
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