KEGG   Garra rufa (doctor fish): 141289624
Entry
141289624         CDS       T11039                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
grf  Garra rufa (doctor fish)
Pathway
grf03082  ATP-dependent chromatin remodeling
grf03083  Polycomb repressive complex
grf04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:grf00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    141289624 (rbbp4)
   03083 Polycomb repressive complex
    141289624 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    141289624 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:grf03036]
    141289624 (rbbp4)
Chromosome and associated proteins [BR:grf03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     141289624 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     141289624 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     141289624 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     141289624 (rbbp4)
    PRC2.2
     141289624 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     141289624 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    141289624 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    141289624 (rbbp4)
   NuRF complex
    141289624 (rbbp4)
   NuRF complex (fruit fly)
    141289624 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 141289624
NCBI-ProteinID: XP_073677878
LinkDB
Position
17:5819488..5830641
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
FSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQG
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagaagctgcctttgatgacgcggtggaggagagggtcataaatgaagaa
tataaaatatggaagaaaaacacaccgtttctttatgatctggtgatgacccacgcgctg
gagtggcccagtcttactgctcagtggttgccagatgtcaccagacccgaagggaaggat
tttagcgtccaccggctggttctcggcacacatacctctgatgagcagaatcacctggtt
attgccagtgtccagctgcccaatgatgacgcccagtttgacgcctcacattatgacagt
gaaaaaggagaatttggtggttttggctcagtgagtggaaagatagagattgagatcaag
atcaatcatgagggagaagtgaacagggctcgctacatgccacagaacccctgcatcatt
gccaccaagacccccactagtgatgtgctggtctttgactacaccaaacacccctccaaa
cctgacccctcgggtgagtgtactcctgacctgcgtttgcggggacatcagaaagaagga
tatggtttgtcctggaaccccaacctgagtggctgcctgctgagtgcgtctgatgatcat
accatctgtctgtgggacatcagcacagtgccaaaggagggaaaaatagtggacgctaag
accattttcactggtcacactgctgtagtggaggatgtgtcttggcacctgctgcacgag
tctctctttgggtctgttgcagatgaccagaagcttatgatctgggacacacgctccaac
aacacatccaaacccagtcatgcagtagatgcccacactgcagaggtcaactgtttgtcc
ttcaacccatacagcgagttcattctggcaaccggttctgctgacaaaactgttgccttg
tgggatctgcgaaacctgaaactgaaacttcattcatttgaatcgcacaaagatgaaatc
ttccaggttcagtggtcaccccataatgagaccatcctggcctccagtggaacagacagg
cgactcaatgtttgggacctcagtaaaattggtgaggaacagtcaccagaagatgcagaa
gatggacctccagagctactgttcatccatggaggccatacagccaagatttctgacttc
tcctggaatccaaatgaaccgtgggtgatttgctcagtgtctgaggacaacatcatgcaa
gtctggcagatggcggagaacatctacaatgatgaggacccagagggggcagcagacact
gaggttcagggataa

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