Garra rufa (doctor fish): 141289672
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Entry
141289672 CDS
T11039
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
grf03015
mRNA surveillance pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141289672 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
141289672 (ddx39b)
03015 mRNA surveillance pathway
141289672 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141289672 (ddx39b)
03041 Spliceosome [BR:
grf03041
]
141289672 (ddx39b)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141289672 (ddx39b)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141289672 (ddx39b)
Spliceosome [BR:
grf03041
]
Complex C
Other components
EJC/TREX
141289672 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141289672 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
141289672
NCBI-ProteinID:
XP_073677931
LinkDB
All DBs
Position
17:complement(9002014..9026422)
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AA seq
435 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAGGTGDTGLGHNDGGISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgacgttgagaacgagctgttggactatgaggaggatgaggttgatgca
ggtggtaccggggacacaggtcttgggcacaacgatggtggaatatccatcaggaaagaa
ggcgtcaaagggtcatatgtgtccatccactcttcaggattcagagatttccttctcaaa
ccagaactgctcagagctatagtggactgtggctttgagcatccatctgaagttcagcat
gaatgcattcctcaggcgatactggggatggatgtgttatgtcaggccaagtctggaatg
gggaagactgctgtttttgtgttggccacccttcagcagctagagccagtgaccgggcag
gtgtcagtgttggtgatgtgtcacacccgagagctggccttccagatcagcaaagagtat
gagcgcttctccaaatacatgcccagtgtcaaggtggcagtgttctttggtggtttatct
ataaagaaggacgaggaggttctgaagagagagagccctcatgtggtggtgggaactcct
ggacgtattctagctctgtctcgcaacaagagtctcaacctgcgtcacatcaagcacttc
atcctggatgaatgcgacaagatgctagagcaacttgacatgcggcgtgatgtccaggag
atctttcgtatgacccctcatgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcctgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gagaccaagctgacgcttcacggcctccagcagtactacgtcaaactgaaggacaacgag
aagaacaggaagctctttgacctcctggatgtgttggagttcaaccaggtggtgatcttc
gtgaagtccgtgcagcgctgtattgctctggctcagttgctggtggagcaaaatttccct
gccattgccattcatagagcaatgcctcaagacgaacgactagctcgataccagcaattc
aaggacttccagagacggatcctggtggccacaaacctgtttggccgaggcatggacatc
gaaagagtcaacatcgccttcaactacgacatgcctgaagattcagacacatacctgcac
agggttgcaagggctggcaggtttggaacgaaaggtctggcaatcacctttgtgtcagat
gagactgatgcccgcactttgaacgatgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcatcatatattgaacaaacacgataa
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