Garra rufa (doctor fish): 141290001
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Entry
141290001 CDS
T11039
Symbol
irx1b
Name
(RefSeq) iroquois-class homeodomain protein IRX-1b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141290001 (irx1b)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
141290001 (irx1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
141290001
NCBI-ProteinID:
XP_073678298
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Position
17:8258568..8261411
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AA seq
442 aa
AA seq
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MSFPQLGYPQFLNASQEVYGAERTAVMPSSPREGSSENSANPTTAAAAITPMLGMYANPW
TVQNYSAFLPYNSAELALLSQMGSQYELKDNPGAHPPGFAVHAAPGFYPYGQYQYGDPAR
AKSATRETTSTLKAWLQEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK
VTWGRSAEDRDGRIFDSDNEDDADKNDDEEEIDLETIDMDKPEEPRVEENSDTQRERENM
ETPRILSSPALKNTDSPMSSSNKEQSVVKSVGEVSPGGPVCQRPGNSKPKIWSLAETATS
PDNTQKLGVSSTPAGLRASPSTHPAFLSTNGIYTCQIGKLHNWASAAFLSANSLMGVRSL
LSQNSNFPNHSPVTNPEKKPSSASGSPCLDSDNSSDSFSPKHNDQENVQRIESPTLASRS
PFPVIHDRSHHETSQRALKTIS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcccccagctgggttacccacagttcctaaacgcctcccaagaggtgtacgga
gcggagcgcaccgctgtcatgccgtcctctccacgcgagggaagctcggagaacagcgca
aatcccacgaccgcagcggcggcgatcacgccgatgctcggcatgtacgcgaatccgtgg
accgtgcaaaactacagcgcctttttaccttacaacagtgctgagctggccctgctctct
cagatggggtcgcagtatgagctgaaggataaccccggggcacatccaccaggatttgca
gtccacgctgcgcccggtttctacccatacggccagtaccagtacggtgatccggcccgg
gccaagagcgctaccagagagaccaccagcacactgaaagcatggttgcaggagcataaa
aagaacccgtaccccaccaagggcgagaagatcatgctggccatcattactaagatgacc
cttacgcaggtgtccacctggttcgccaatgcgcgccggagactcaagaaggaaaataaa
gtgacttggggtcgcagcgccgaggacagagacggacgaattttcgatagcgacaatgag
gacgacgcagataaaaatgacgacgaggaagaaatcgatctagagaccatcgatatggac
aaacctgaggagcccagagtagaggaaaactcggatactcaacgcgagagagaaaacatg
gaaacgccgcggatattatcctcaccagcacttaaaaacacggacagcccgatgtcgagt
agtaataaagaacagagtgtggtcaaaagcgttggtgaggtgtctcctggtggaccggtg
tgtcagaggcctgggaacagcaaacccaaaatctggtccttggcggagacggcgacaagt
cccgataacacgcagaaactcggtgtctcctcgacgcccgcaggcctcagggcctcaccc
tcgacccatccggctttcctgtccactaacggaatttatacttgccagattgggaaacta
cacaactgggctagcgccgctttcctcagtgcaaattctctgatgggagtgcgctcactt
ttgagtcaaaacagtaacttcccaaaccacagccccgttacgaaccccgaaaagaagccc
tcgtctgcctctgggtctccatgtctagacagcgacaactcatccgacagtttcagtccc
aaacataatgatcaagagaacgtacagagaattgaatctccaacacttgcttccagatca
ccgtttccagtcatccatgacaggtctcatcatgaaacatcacaacgcgctctgaagacg
atttcttga
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