KEGG   Garra rufa (doctor fish): 141290014
Entry
141290014         CDS       T11039                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
grf  Garra rufa (doctor fish)
Pathway
grf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:grf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141290014 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:grf03041]
    141290014 (snrnp40)
Spliceosome [BR:grf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    141290014 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    141290014 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Cytochrom_D1 Beta-prop_Nup120_160 Beta-prop_IFT140_2nd WD40_like
Other DBs
NCBI-GeneID: 141290014
NCBI-ProteinID: XP_073678310
LinkDB
Position
17:25230419..25237253
AA seq 347 aa
MIEPKKRGAEMAVVPAGVKRPRTELVAAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEIAFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgcggtgcagagatggcagtcgttcccgctggggtgaagagg
cccaggacagagctggtggctgcagcgcagtcccagcagctctctgctatgggccccccg
cgcagctccagtctgcaggctcccataatgctgctctctggtcatgaaggtgaagtttac
tgctgcaagtttcaccccaatggagccacgttagcctcttctggatatgaccgcctcatc
ttgatgtggaatgtatatggagactgtgagaactatgcaacacttaaaggccacagtgga
gctgtgatggagcttcattataacacagatggcagtctgctcttttcagccagtacggac
aagacggtgtgtgtgtgggacagtgagacaggggagcgtgtgaagcgtctgaaaggtcac
acgtcctttgtgaactcatgttttccagctcgccgtggcccacagctggcctgtacaggc
agtgatgacggaactgtaaagctgtgggacatcaggaagaaggcctctgttcacacattc
cagaacacgtatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
ggaggcatcgacaatgatataaaggtgtgggacctcagacagaacaaactgatttacagt
atgcagggtcacggtgactctgtgacaggtctgagtctcagtgctgatgggtcctacctg
ctgtcgaactcgatggataatagtgtgcgcgtctgggatatccgtccatttgcaccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataactttgagaagaatctgctcaga
tgctcttggtctgctgatgggagtaagattgctgctggttctgctgacaggtttgtgtat
atttgggacacaacatcccgtaggatcctttataagctccctggtcatgctgggtctgtg
aatgagatcgctttccatccagaagaaccaattgttctctctggatccagtgataaacgc
ctctacattggagagattcaataa

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