Garra rufa (doctor fish): 141290054
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Entry
141290054 CDS
T11039
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
grf Garra rufa (doctor fish)
Pathway
grf03022
Basal transcription factors
grf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141290054 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
141290054 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141290054 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
grf03400
]
141290054 (gtf2h4)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
141290054 (gtf2h4)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
141290054 (gtf2h4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
141290054
NCBI-ProteinID:
XP_073678351
LinkDB
All DBs
Position
17:9028909..9044419
Genome browser
AA seq
466 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPSLGKNYVMRMLFLDHPLP
QAAVALWVKKDSQKDHDQCVSVLTGLRLWHSQHLQGGLQGFVLNPVFKDNLRIALLGGGK
PWADEGSNLGPDRHARDVDSLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKS
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTVNPTSGSASSALG
ATAGTGDTGFIVVETNYRVYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQANT
NGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQA
DFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKRQKSHT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcgagtccagctgcagtgcaagaacttgcacgagtatctgaaggaactgagt
ccagagatccttgacagactctacaatcacccagcaacatgcttggcagtctacagggaa
cttccatcattgggaaagaattatgtgatgcggatgctgtttttagaccatccactccca
caagctgcagttgcattgtgggtaaaaaaagacagtcaaaaagaccacgatcagtgtgtg
tcagtgttaacagggctacggctctggcacagtcagcaccttcaaggtggactccaaggc
tttgttctcaaccccgtgtttaaagacaacctgagaatagcacttctaggcggtggtaaa
ccgtgggcagatgagggcagcaacctgggtcccgatcgccatgcgagggatgtcgacagt
ctcgaccgctatgccatggagcgttgggaggtcatcctccacttcatggtgggctctccc
agcgcagccgtcagccaagatctggcccagcttctcatacaggctggtctcatgaagagc
gaggctggtgatgctccttgtatcacatcagcagggtttcagttcctgctgctggacaca
gcatctcaactgtggtacttcaccctgcagtacctcaaaacagcacagtcgagaggaatg
gacctggtggagattctttcctttttgttccagctaagtttttccactcttggtagggac
tattctgtggagggcatgagtgagtctctgctcacatttttgcagcatttgcgagaattc
ggtctggttttccaaagaaagaggaagtcaaggaggtactatcctaccaggctggccata
actctagctgcaggagtcacagtaaaccctacctccggatctgcctcttctgcactcgga
gccacagcgggaacaggagacacgggcttcatcgttgtagaaacaaattaccgtgtatat
gcctacacaaactcagagctccagattgcactagtagcgctatttagcgagatgctgtat
cggtttcctaatctggtggttgctcaggttaccagagagtcggtgcagcaggccaacact
aacggcataacagcacagcagatcattcattttttaaggacccgagcacatccagtaatg
cttaaacagacccccgttcttcccccaaccatcacagatcagatcagactttgggagctc
gagaaagatcgcttacagtttactgagggagtgttatacaaccagtttttatcccaggct
gattttgaagtgttgcgggacagggctcagggtttaggtgtgctggtttggcagaacccc
gctcacagggtcatggtggtgacgccacacggacacagcgaggttaagaggttctggaag
agacaaaagagccatacgtaa
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