Garra rufa (doctor fish): 141290135
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Entry
141290135 CDS
T11039
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
grf Garra rufa (doctor fish)
Pathway
grf03320
PPAR signaling pathway
grf04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
141290135 (rxrba)
03320 PPAR signaling pathway
141290135 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141290135 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
grf03310
]
141290135 (rxrba)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
141290135 (rxrba)
Nuclear receptors [BR:
grf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
141290135 (rxrba)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
C1_2
Motif
Other DBs
NCBI-GeneID:
141290135
NCBI-ProteinID:
XP_073678436
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All DBs
Position
17:complement(39212537..39241057)
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AA seq
480 aa
AA seq
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MGDSRDSRSPDSSSVSSPPSGQRSPPLAPSAAAMTSLPPITSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQMNMFSRNSEINSTVSMSGLHAVSSSDDVKPPFGLKPLS
SHSPGPMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDK
RQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESTSAANEEMPVEK
ILEAEMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDD
QVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEV
GAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEA
YCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagcagagattctcgcagtccagacagctcatccgtttcttcaccaccatca
ggtcagcgttcacccccgttggccccttcagccgccgccatgacttctctgccacccatc
acttcggctgtgaacagtcccatcagcagcatgggctcacctttctcagtcatcagctcc
tctctgggttctccttgccttcctggaactccctcagtaggctacggccccatcagcagc
ccacagatgaacatgttttccagaaactcagagatcaactccaccgtttctatgtccggt
ctgcacgccgtcagcagctctgatgatgtcaaaccgcccttcggtttaaagccgctgtcc
agccacagcccaggccccatggtctctcagaaacgcttgtgtgccatctgtggagatcgc
tcctctggcaagcactatggcgtgtacagctgtgagggctgcaagggctttttcaagcgc
actgtgaggaaggacctgagctacacatgcagagacaataaggactgtctggtggacaaa
cgccagaggaaccgctgccagtactgccgctaccagaagtgcctggccatggggatgaag
agagaggtggtccaagatgaacgacaacgatccgttcaggaggagcgtcagaggaacaag
gagcgggatggtgaggtggagtccaccagcgccgccaacgaagagatgcccgtggagaag
atcctggaagcagagatggccgtggagcagaagaccgagctgcatgccgatggcagctca
gggggaagctctccaaatgatccagtcacgaatatctgccaggcagctgataaacagctg
ttcacattggtggagtgggcaaaacggatccctcacttcagtgagctgtctctggatgac
caggtcatcctgctgcgtgctggctggaatgagctactgatcgcgtcattttctcatcgc
tccatcacggtgaaggatggcattctgctggccaccggcctccacgtgcacaggaatagc
gctcacagcgctggggtgggagccatctttgacagggagagtgcgcacaatgcagaggtt
ggggccatattcgacagggtgctgacagagctggtgagcaagatgagggatatgcagatg
gataaaacagagttgggctgcctgagagccatcatcctcttcaacccagatgcaaaggga
ttgtcaagcccaagcgaagtggagttactgagagagaaggtctatgcatcgctggaggct
tattgtaaacagagatatcctgaccagcagggcaggtttgccaagctcctcctccggctg
ccagcgctgcgctccattggcctgaagtgcctggagcacctgttcttcttcaagctaatt
ggagacaccccaatcgacaccttcttaatggaaatgcttgaagcgccacatcagctcacc
taa
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