Garra rufa (doctor fish): 141290798
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Entry
141290798 CDS
T11039
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141290798 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141290798 (hbs1l)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141290798 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
141290798
NCBI-ProteinID:
XP_073679020
LinkDB
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Position
18:complement(29900651..29937135)
Genome browser
AA seq
683 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMFGQSVEDDYCISPATAAQFIYSRQDSRQARHVETLEEAE
YEEEEEEMPTSPSITSTLDPLQQGRLYSCLDQMRAVLGDSIPDSTLTQAALKYDCDPHRA
LDFILTEENTNTHAPPARTNPQPEPITTAAPQKAKSRETPESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGIVVPSVRRGPSPEVTAAPTTETPSKLSAANEDSTVPTPNRPAGKS
KQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVTLMDAPGHKDFIPNMITGAAQ
ADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
VSKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTRSKVADLTAWYTGPCLLEQIDSFKPPQ
RSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGVTLHDEAL
DWAAAGDHVSLTVTGMDIIKINVGCIFCDPKEPIKACTRFRARILLFNIEVPVTQGFPVL
LHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtcacaggaatgtccgaggttataactacgacgaagattttgaggatgatgac
atgtttgggcagtcagtggaggacgactactgcatctctcctgcaactgctgcgcagttt
atctactcacgtcaagactcgaggcaggctcgacatgtagagaccctggaagaggcagaa
tatgaggaggaggaagaggagatgccaacctctccctccatcacaagtacactagaccca
ctacagcaaggtcgcttgtactcctgtttggatcagatgagagctgtgctgggagattca
attccagactccacactgactcaggcagctctaaaatatgactgtgaccctcacagagcc
cttgattttatcctaactgaggagaacaccaatacccacgcccctccagccagaaccaac
ccacagcctgagcctatcaccacagctgcaccacagaaagctaaatcacgggagactcca
gagagtcgtgttgaagcagaagttgtcccgaaggttgctcgcatgactgtgtcaggaaag
aagcagaccatgggctttgatgtgcgaagtgcggaagaaaacggcattgttgtcccgtca
gttcgcagagggccaagtccagaggtcaccgctgcaccaaccacagagaccccatccaaa
ctatcggccgcaaatgaagactctactgtcccgaccccgaatcgaccagctggaaagagc
aaacagcagctgaacatccgtgctgaactggagaagagacaaggaggaaagccattactc
aacctggtggtcataggtcacgtagatgctggtaagagcactctcatgggtcatctctta
tatctgctggggaacgttaataagagaaccatgcacaaatatgagcaggaggccaagaaa
gctggcaaggcctcattcgcctatgcgtgggtgctggacgagacaggagaagagagagac
agaggagtgactatggatgtgggcatgaccaagtttgagacggactcgaaagttgttact
ctgatggacgcaccaggacacaaagacttcattccgaacatgatcacaggggctgcacag
gcagatgtcgctgtgttagtggtagatgccagccgtggggagtttgaggccgggttcgag
gcaggggggcagacccgcgagcacggcctgctggttcgatcccttggtgtcacacagctt
gctgttgctgtcaacaagatggaccaggtgaactggcagcaagagaggttccaggaaata
gtctcaaagctcggtcactttctgaagcaggctggttttaaggattcagatgtgttttac
atccctaccagcggcctatcaggagagaatctgaccactaggagtaaagttgcagacctt
acagcctggtacactggaccatgcctactggaacagatagattcgttcaaaccaccccag
aggtcagtggagaagccgttcaggctttgtgtctcagatgtcttcaaagatcaaggctct
gggttttgtgtgacggggaagatcgaggctggcttcattcagacaggagataaagtgctg
gccatgcctcctaatgagacctgcactgtgaaaggggtcactctccacgatgaagcatta
gactgggcagctgctggtgatcatgtcagtctaactgtaactggcatggacatcatcaaa
ataaatgttggatgtatattctgtgaccccaaagagcccatcaaagcctgtacaagattc
cgagcaagaattctcctctttaatattgaagttcccgtcacgcaaggctttcctgtactg
ttacattatcagaccgtaagcgaaccagccactattaggaagttagtcagtgtattgcac
aagagcagtggagaagttcttaagaagaaaccaaagtgtttgagtaaaggacagaacgct
gtggtggagattcaaacacagaggcctgtggctctggagctctataaggactataaagaa
ctggggcggttcatgctgagatacgtgggctccaccattgccgctggagttgtcacagag
atcaaagagtaa
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