Garra rufa (doctor fish): 141291510
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Entry
141291510 CDS
T11039
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM7-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
141291510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141291510
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141291510
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
141291510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
zf-RING_UBOX
PRY
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_3
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_2
zf-RING_10
zf-RING_4
DUF4667
zf_RING_Vps8
DUF7605
U-box
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
141291510
NCBI-ProteinID:
XP_073679767
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All DBs
Position
18:11015461..11019308
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AA seq
497 aa
AA seq
DB search
MSQSQPEERLALELSCAICLQLYRDPVALPCGHNYCLGCIKNAASAEDPKSPKRCPECRE
DYGSPEMLLKNFKLSSIVDGFLVATTGGGLKGGPTVQCERDGKRCPVHLKVTEYLCVQER
LFLCSECLMEGMHQHHEVQTFEVAKEEMKRVLEELGKSVSDKLQMTEALLKSASDGPTDK
AEDKLVARANILLDNMTSLISTYKSRMSSVMDDKLHSRDKSWQANLCDLEGCLHQLQEAQ
KCTGEVLSQSSEFLFIQNYLNVEARVRQAANVTIPALPAQESSNAKQLRSVLRTDAFHAE
MSLLLEYLHGMMNPLDLTFNQATAHPSLLLSSDLKTVKQCAGIKSSNAGDQSERFSTATQ
VMCTEGLSTGVHMWAVEVGPGCMWSVGVCYKSIPRKGDHSRLGHNTSSWRLQWKSKKLTA
CYDSANVAVGEGLVMPPKKVEVTLDYEGGTIAFHSSGQGGRRQHLHTFSAVFKDSVYPAF
GLHSTSEESWITLLSGV
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaagccaacctgaggagcgtctagctttggagttgagctgtgcaatctgtttg
cagctgtaccgtgatcctgtggcccttccctgtggacacaactactgtctgggttgcata
aaaaatgctgccagcgcagaagatcccaagtccccgaaacggtgcccagaatgcagggaa
gattacggcagcccggagatgcttctcaagaacttcaagctcagcagtatcgtggacggg
ttcctggtggccacgacaggtggtggactgaaaggaggccctacagtgcaatgcgaacga
gatgggaagaggtgccctgtgcacttgaaggtcacggagtacctctgcgtgcaggagcga
ctgtttctctgctccgagtgcttgatggagggaatgcaccagcaccatgaggtgcagacg
tttgaggtagcgaaggaggaaatgaagagagttcttgaggaactggggaagtctgtgtct
gacaagctacagatgacagaagctctgctgaaaagtgccagtgacggtcctacagacaag
gccgaagataaactagtggccagagcgaacatactgctggacaacatgacttcgcttata
agtacatacaagagtcgcatgagctccgtaatggacgacaagcttcattcacgggacaaa
agttggcaggccaatctatgcgatttggagggttgtctacaccagctgcaggaagcccaa
aagtgcaccggtgaggttctctctcaatcctcagagtttctcttcatccagaactatctc
aatgtcgaagcaagggtccgccaggctgctaacgtcaccattccagctctaccagcccaa
gagtcttccaatgccaagcagctacgctcagtactacgtacagacgccttccatgccgag
atgagtcttctgttggagtacctccatggtatgatgaaccctctagacctgaccttcaac
caagccacggcccatcctagtcttctcctgtccagcgatctcaaaacagtcaagcagtgt
gccggaattaagagcagcaacgctggagatcagagcgaacgcttctccacagccactcag
gtcatgtgcaccgaagggttatccacaggagttcacatgtgggctgtagaagttggtcct
gggtgtatgtggtctgtgggagtgtgctacaaaagcatcccacgcaaaggtgaccacagt
aggcttgggcataacaccagttcctggaggttgcaatggaaaagcaagaagctgacggca
tgctacgactctgcaaatgtggccgtaggtgaagggctggtcatgccgccgaagaaggtc
gaagtgaccctcgattacgaaggaggaactattgcattccacagctcaggtcaaggaggg
cgaaggcagcatcttcatacatttagtgccgtgttcaaggactcagtgtatcctgcattc
gggctccactctacctcagaggagtcttggataactcttctgagtggagtttga
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