Garra rufa (doctor fish): 141291871
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Entry
141291871 CDS
T11039
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141291871 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141291871 (nup54)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
141291871 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
LPP
XhlA
Motif
Other DBs
NCBI-GeneID:
141291871
NCBI-ProteinID:
XP_073679984
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Position
19:42442672..42452378
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AA seq
560 aa
AA seq
DB search
MAFNFGGASNSASLSGTGFGAATTTSASTGFGFGSGGTGFGSLAPSGGPVAPVSFGGFGM
GPAAPVFSFGSSLSGAGAFGGFGSTTTTAGAGTNFNFSTPSNAGASLFGNTQNKGFGFSS
ALGSGAPAAAGFGGTLGGTGLGFGGFGGIQPAQNQQGGVFNQQASQSSQLFNMASALSAP
SVLSDERDSILARWNQLQAFWGVGKGYFSSSTPPVEFSQENPFCRFKAVGYSCVSDVKDE
DGLVALALNRKEADVRCQQQQVVESLHKVLGGNPTLTVNVEGVRALPDDQTEIIIYLVER
SPNGTSKRVPASTLYSYMEQMNVKSQLQQLGVLMAVSRTALTPAQLKQLLQNPPAGVDPI
IWEQAKVDNPDPEKLIPVPMVGFKELLRRLKIQDQMTKQHQTRVDIISNDISELQRNQAT
TAAKITQYKRKLMDLSHRVLQVXXKQEVQRKSGYAIQLDEEHLRVQLETIQSELNAPTQF
KGRLNELMSQIRMQNHFGAVRSEERYRVDADLLREIRQHLKHQQEGLSHLISVIKDDLDD
IKTIEDGLHDSVHGRGSKLS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaacttcggcggcgcgtccaacagcgcgagtctttcgggcacaggctttgga
gccgcgaccacgacatccgcgtccacgggcttcggcttcggatcgggcggcacgggattc
ggctctctggccccgagcggtggccccgttgcccccgttagttttggggggttcggtatg
ggccccgcggcccctgtgttcagttttggcagtagcctcagtggagcaggtgcattcgga
gggttcggctccaccaccaccaccgccggcgccggcaccaacttcaatttctccacgccg
tcaaacgcaggtgccagtctcttcggaaacactcagaataagggcttcggcttctcgtcc
gctctgggctccggcgctccggcggcggcgggctttggcggaactctaggcggcaccgga
ctgggcttcggaggattcgggggcatccagcccgctcagaaccaacaaggaggagtgttt
aaccagcaggcgtctcagtccagtcagctctttaacatggccagcgctctctccgcccca
tcggtcctcagcgacgagcgcgactccattctggcccgatggaaccagctgcaggccttc
tggggtgtgggaaaaggttatttcagcagcagcacaccaccggtggagttcagtcaggag
aaccccttctgccgcttcaaggcggtgggctacagctgtgtttctgatgtgaaggatgag
gatggtctagtggctctggctctcaataggaaggaagctgacgttcgctgtcagcagcag
caggtggttgagtcgttgcataaggttctgggaggcaatccgactcttacggtcaacgtg
gagggagtgcgagcgttacctgatgaccaaacagagataatcatttatctggtggaacgt
tcacctaacggcacgtcgaagagggtcccggcgtccacgctctacagttacatggagcag
atgaacgtgaagtctcaactgcagcagctgggcgtcctcatggccgtcagtcgcaccgca
ctgaccccggctcagctcaaacagctgctgcagaatcctcccgcaggtgtggatcccatc
atctgggaacaggccaaagtggacaatccagacccagagaagttgattccggtgcccatg
gtgggcttcaaagagctgctgcgcagactgaagattcaagatcagatgaccaaacagcac
cagacccgagtagatatcatctctaatgacatcagtgagctgcagaggaatcaggccacg
accgccgccaaaatcacgcagtataaacgcaagctgatggacctctcgcacagagtgctg
caggtnnnnnnnaaacaggaagttcagaggaagagcggttacgccattcagctggatgag
gaacatctgagagttcagctggaaaccatccaatcagagctcaacgcaccgacacagttc
aaggggcgactgaacgaactcatgtctcagattcggatgcagaatcattttggagccgtt
cgttcagaagagcgttatcgtgttgatgccgacctgctgagagaaatcagacagcatctg
aagcatcagcaggagggtttgagtcacctgatcagcgtcattaaagacgatctggacgac
atcaagacgattgaagacggacttcacgacagcgttcacggacgcggcagcaaactcagc
tga
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