Garra rufa (doctor fish): 141292055
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Entry
141292055 CDS
T11039
Symbol
cacna1bb
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
grf Garra rufa (doctor fish)
Pathway
grf04010
MAPK signaling pathway
grf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
141292055 (cacna1bb)
04020 Calcium signaling pathway
141292055 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
grf04040
]
141292055 (cacna1bb)
Ion channels [BR:
grf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
141292055 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
141292055
NCBI-ProteinID:
XP_073680123
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All DBs
Position
19:30270875..30356872
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AA seq
2096 aa
AA seq
DB search
MCSAAACFAPQSATSAGEKVGDYPCGAERPSRVCPNGTECKEYWTGPNFGITNFDNILFA
ILTVFQCITMEGWTDVLYDANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKER
ERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLAEEDQNAEEKSPLDGAWYKRKQN
NPVLKRTKSRKGRNDLISAEEGEEHFTDISSVAPPGSPFARASLKSSKNDSSSYFRRKEK
RIRFFIRRMVKAQSFYWIVLCLVGLNTMCVAMVHYDQPEWLTKALYLAEFVFLGLFLTEM
TLKMYGLGPRNYFHSSFNCFDFGVIVGSIFEVVWAAIQPGASFGISVLRALRLLRIFKVT
KYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDSF
PAAIMTVFQILTGEDWNAVMYHGIESQGGVRGGMFSSVYFIVLTLFGNYTLLNVFLAIAV
DNLANAQELTKDEEEQEEAAKKSIALQKAMEVKEVSPMSAANISIAAFVKQNRDAISRRS
SVCSVHSLKEQQRSLQKMSIWEQRTNQLRRHNLRSSSEALYNELEPEERLRVSSALHLRP
DMKAHHDRPLVVEHRDGTVDNSRTDRDGDTSDSQPSSGQPRKHHRCRGENGDAGEGRHHR
HHSRNREHQGGLEHSNSQDGEHRNHHTAGSPEEGIGMEDREHRHHHSRRSREVNGNGNGN
STIGNGGRGEGRIRGHREGEGGNGERRRHRPRVKAQSTLDGEECRENGGKHRGRPTGTDS
LATSPLQTPTEEKPEDKDNLKNSTRVGPTGVNIPVTITAPPGETTVIPMNNIDGDSLLLN
EEKKDLDELNQNVPKHILPYSSMFVFGPTNPVRRLCHYVVNLRYFEMCILTVITMSSIAL
AAEDPVQANAPRNDVLKYLDYVFTGVFTFEMVIKMIDLGLLLHPGSYFRDPWNILDFIVV
TGALVAFACSGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKSVFDCVVNSLKNVLNILI
VYILFMFIFAVIAVQLFKGKFFHCTDESKALEKDCRGQFLEYGSDGVAMTQPREWKKYDF
HYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATYEDQGPSPGYRMETSIFYVVYFIVFPFF
FVNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAINAKPLTRYMPQDKQSYQYKIWK
FVVSTPFEYSILTMIAINTVVLMMKFHGAPKPYEDMLKWLNIIFTALFTLECILKVIAFG
PLDKRINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAII
GMQVFGNIMLSEESAINIHNNFQTFFQALMLLFRSATGEGWHEIMLSCLSERQCDRDSGY
TGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFIRVWA
EYDPAACGRISYLDMYEMLRHMSPPLGLGKKCPPRIAYKRLVRMNMPIAEDSTVHFTSTL
MALIRTALEIKLASGVLAQRLCDAELRKEINKIWSNLSSKTVDLLVTPHKRKPFLLXPAS
LIDNELTVGKVYAALMIFDYYKQNRAKRLQQQQAAPGTQVEATKKNXIYLKVGVLFRPML
PLTHLHDQEPLVPKALPSSQSDTTPQPDATPTSFHLTNGDAVQSQSSAMKKSQSGDISQE
VTQEANRRPVQRGQSEDVPYTYRSQELVEMTDMENDSDVGGYLVLEGHGRAASMPRLNAG
FQRSHLRHTAGTYLAPIADVSPMRRSTSSLTPQRGVREVNLSDYDLERPKVALGQSFAQE
RDRERAHHHHHHHHHRCQRRRDKKHKSLDRAISEEQPPPEADPNTESLPRERARERDRGR
SHERKHHSSSAVERKQRYYSCDRYGSHEHDQSVSAGPSRSTSPGEPHDPLRLKQGINTAK
GTSVVHTSGSSTPCRGRRQLPQTPLTPRPAVAYKTANSSPVQLNTAQSTGPCPTRLSRGL
SEHDALLSGSTHRQSPVPVTRIGSDPNLGPLQQDSNLSEADDFHDALSTYGTGRSPRTAA
SVAHTSSGATPTSTLLSRSLSGVPNGYHYSLGVNAAPGSSGRASGSYQGTERDDWC
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atgtgctcagctgctgcttgcttcgcccctcaatcagcaacatcagcaggggaaaaagta
ggtgattatccatgtggagcagaacgtccctcaagagtgtgtccaaatggaacagaatgt
aaggagtactggacaggacctaattttggcatcacaaatttcgataacatcctcttcgcc
atcctcacagtcttccagtgcatcaccatggaaggatggacagatgtactatacgatgcc
aatgatgcctcggggaacacctggaactggttgtacttcatccctctcatcatcatcggc
tcctttttcatgcttaacctcgtcctgggtgtcttatcaggagagtttgccaaagaacga
gaacgagttgagaaaaggcaggagttcttgaagctccgtagacagcagcagattgagaga
gagctcactggctacttggagtggatatgcaaagcagaggaagtgttgctggcagaggag
gatcagaatgctgaggagaaatccccactggatggtgcgtggtacaagaggaaacagaac
aacccagttctgaaaagaacaaagagcagaaagggtagaaatgacctcatcagtgctgaa
gagggtgaggaacatttcacagacatctcctctgtcgcgccacctggatcaccttttgcc
agagctagcctgaagagcagtaagaatgatagctcctcgtatttccgtcggaaggaaaag
aggatacgctttttcattcggcggatggtgaaggcacaaagtttctactggattgtcctg
tgtttggtgggcttgaacactatgtgtgtggccatggtccattacgaccaacctgagtgg
ctcaccaaggccctgtacctggcagagtttgtattcctgggtctgtttctgacagagatg
actctgaagatgtacggcctggggcccagaaactactttcactcctcattcaactgtttt
gactttggggtaattgtgggaagtatatttgaggtggtgtgggcagcgatccagcctggt
gcgtcttttgggatcagtgttttgagagccctgcgcctgcttcgtatttttaaagtgacc
aagtattggaactctttgcggaatcttgtggtttccctgttaaactccatgaagtccatc
attagcttgctcttcctcctcttcctcttcatcgtggtgtttgccctgctaggcatgcaa
ctcttcgggggccagtttaattttgaagatgaaactcccactacaaactttgacagcttc
cctgcagccataatgacagtcttccagattttgacaggagaagattggaatgcagtgatg
tatcatgggatagagtcccagggtggcgtccggggtggaatgttctcctcggtctacttc
attgttctaacactgtttggaaactacacacttctcaatgtattcttggccattgctgtg
gataaccttgccaatgcacaggagctgacaaaggatgaagaggaacaagaggaggcagcg
aagaagagcatagctcttcagaaggccatggaggtgaaggaggtcagccccatgtctgct
gccaacatctcaatagcagcttttgtaaagcaaaatcgagatgcaatctctcgcaggtct
tcagtctgcagcgttcactcacttaaagagcagcagaggtcactgcagaagatgtccata
tgggagcagcgcaccaaccagctgcgaagacataacctgcgcagcagcagcgaggccctc
tacaatgaactagagcctgaagagcgtctgcgtgtgtcttcggcactccatctgcggccc
gacatgaaggcccaccacgatcgtccactggtagtggagcaccgagacggcactgtggac
aattccaggactgacagagatggagatacttcagactctcaaccgtcctccggccaacca
agaaagcaccatcgatgtcgaggagagaatggagatgcaggagaggggaggcaccataga
caccacagccgaaacagagagcaccagggtggcctggagcacagcaacagtcaagatgga
gaacacagaaaccaccacacggctggttctcctgaggagggtatagggatggaggataga
gaacacagacaccatcattcgcgtcgatctagagaggtcaatgggaatggcaacggcaac
agcacgatcggtaatggaggccgaggtgagggtaggatacgaggtcacagagagggtgaa
ggagggaatggagagagaaggagacaccggccacgtgttaaagcccaatccacactggat
ggagaagaatgcagagagaatggtggaaaacacaggggcagaccaacaggaactgatagt
ctggccaccagccctctccagactcctactgaagagaagccagaagacaaagataatcta
aaaaacagcaccagagtgggtccaactggagtcaacatccctgtcaccataactgcccca
ccaggagagactacagtcattcccatgaacaacattgatggtgacagtttactgctgaac
gaggaaaagaaggatcttgatgagctaaatcagaatgtgcccaaacacattctgccatac
agctccatgtttgtgtttggtccaactaacccagtaagacggctgtgtcattatgtggtg
aacctacggtattttgagatgtgtatcctcacagtcatcaccatgagcagcatcgctctc
gctgctgaagaccctgtgcaggccaatgccccgcgtaatgatgtgctgaaatatctagat
tacgtcttcactggtgtgttcacgttcgagatggttataaagatgattgatcttggcctg
ctgttgcatcctgggtcttactttagggatccgtggaacatactggacttcatcgtagtc
accggcgctctggtggcattcgcctgctcaggaactaaagggaaggacatcaacaccatc
aagtccctaagggtccttcgagtcctgaggcctttgaagaccattaagcgtttgcctaaa
ctcaagtccgtgtttgactgcgtggtgaactctctgaagaatgtgctcaacatcctcatc
gtttacatcctcttcatgttcatcttcgccgttattgctgtgcagcttttcaaggggaag
ttttttcactgtactgatgagtccaaagccctggagaaggactgcaggggtcagttcctg
gaatacggcagtgatggagtggccatgacacagccacgcgagtggaagaagtatgatttc
cattatgacaacgtcctgtgggcctttctgaccctgttcactgtctctacaggagagggt
tggccaacagtgctgaaacactctgttgatgccacatatgaagaccaaggtcccagtccg
ggttaccgcatggaaacgtccatcttctacgttgtctacttcatcgtctttcccttcttc
tttgtcaacatctttgtggctttgatcatcatcacgtttcaggagcagggagataaagcc
atgtcggagtgcagcttggaaaagaacgagcgagcttgtattgacttcgctatcaacgcc
aaacctctgactcgctacatgccacaggacaagcagtcttaccagtacaagatatggaag
tttgtggtgtccactccatttgagtactccatcctgaccatgatcgccatcaacacagtg
gtcctcatgatgaagttccatggtgctcctaaaccgtatgaggacatgttaaagtggctg
aacatcatcttcacggctctcttcacgctggagtgcattctcaaggtcatcgcctttggc
cctctggataagaggattaatctgagtttcctgagactcttccgggccgctcgtctcatt
aaactcctccggcagggttacaccattcgcatcctgctctggaccttcgttcagtccttt
aaggctctgccgtatgtgtgtctcctcattgcaatgctcttcttcatatatgccatcatc
gggatgcaggtgtttggtaacatcatgctgtccgaggagtcggctatcaacattcacaac
aacttccaaactttttttcaggctctcatgttgttgttcaggagtgctacaggggagggt
tggcatgaaattatgctgtcttgtctgagcgaaaggcagtgtgaccgtgattctggctat
actggaaaagagtgcggcagtgatttcgcttacttctactttgtctctttcatcttcctt
tgttccttcctgatgctgaatctgtttgtcgccgtcatcatggataactttgagtacctg
acacgtgacgcttctattctcggtccccatcaccttgatgagttcatccgtgtctgggct
gagtacgaccctgccgcctgtggacgcatatcctacctcgatatgtacgagatgcttcgc
cacatgtcccctccgctaggtttgggaaagaaatgtcctccacgaatcgcctataagcgg
ttggtgaggatgaacatgcccatagctgaagacagtacggttcactttacctccacttta
atggctctcatccggaccgccctggagattaaactggcgtcaggagttctggctcagcgg
ctttgtgatgctgaattaaggaaggaaataaataaaatttggagtaacttgtcttcaaaa
acagtggacctgctggtgacacctcataaacgtaagccctttttgctctaaccagctagt
ctaatcgataatgaactgactgtaggaaaagtctatgctgctctgatgattttcgactac
tataagcagaaccgagccaaaagactccaacagcaacaggctgcaccaggcacacaggta
gaggcaactaaaaagaactaaatatatcttaaagttggagttctcttcagaccgatgctt
cctctcacacacttgcatgatcaggagccactagtgccaaaagccctgccctcttctcaa
tcagataccacaccacagccagatgccacgcccacatcgtttcacctgaccaatggggat
gcagtacaaagccagagcagtgccatgaaaaagtctcaatcaggagacatatctcaggaa
gtcacgcaggaagcaaacagaaggcctgtccaacggggccaatcagaagatgtgccatat
acatacagatctcaggaattagttgagatgactgacatggagaatgactctgatgtgggc
gggtatcttgtgctggagggtcacggcagagctgcctccatgcccagactcaacgctggc
tttcagcggagccacttacgccacaccgccggaacgtatctagcacctatcgcagacgtg
agtcctatgcggcggtctacatcctcgctgactcctcagagaggggtgcgagaggtcaat
ctgagcgattatgacctggagaggcccaaggtggctctgggccagagcttcgctcaggag
agagatagagagagagcccatcatcatcatcaccatcatcatcatcgctgccagcggcgc
agagacaagaagcacaaatcgctggatcgagccatcagcgaggagcagccaccgcctgaa
gcagatccaaacaccgagtcactgcccagggaacgagcacgggagcgagaccgcggccgt
tcccatgagaggaagcaccattcatcctcggcggtggaaagaaagcagcggtattactct
tgtgaccgctacggcagccacgaacatgaccaaagcgtgtccgccgggcccagtagatcc
acatcaccaggagaaccccatgacccattgaggcttaaacagggaattaacacagctaaa
ggaacttcagttgttcatacctcaggctccagcacaccctgccgcgggcgtagacagctc
ccacagacgccccttacacctcggcctgctgttgcctacaagactgccaactcctctccg
gtccagctcaacactgcccagtctacagggccctgccccactcgccttagtcgtggcctg
tcagagcacgatgccctactcagtggtagcacccaccgccaatctcccgtgcctgtcact
cgtatcggctctgaccccaacttaggtcccctccagcaagactcaaacttgtctgaagcg
gacgacttccacgatgccttgagcacgtacggcacgggccgttcccccaggactgccgcc
tccgtcgcccacacgtcatcaggtgcgacccccacttccacgctgctctcgcgcagccta
agcggagtccccaacggatatcactactccctcggagtgaacgctgcacctgggtcgagc
ggcagagcatctggaagctaccaggggactgagagagatgactggtgttag
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