Garra rufa (doctor fish): 141292264
Help
Entry
141292264 CDS
T11039
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141292264 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141292264 (nup188)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
141292264 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
HEAT_SCC3-SA
Motif
Other DBs
NCBI-GeneID:
141292264
NCBI-ProteinID:
XP_073680369
LinkDB
All DBs
Position
19:complement(38230761..38259496)
Genome browser
AA seq
1731 aa
AA seq
DB search
MADSEMCVRSSRELWTILLGRSALREPGQIEAELDRNWERLLQGLSFYKPPSTSAADKLK
ADKDTPQALKDFGLRISKLLGLDEKQSVQILQCYLQEDYRGTRNTLKGVLQDERQSQALL
LKIADYYYEERLCVLRCVLHLLTYFQDERHPYRAEYSNCVSKLEKDLVSNYRQQFESLSK
SEAPTWETHGNLMTERQVSHWFVQCLKEQALLLEILFLYYAYFEMPPNDLSTFARLFKEQ
GFGQRQTNRHLVDKSMDALVERIGFFSALILVEGMDIDFLHKCALEDRTEQHQFYDQQDI
CKEVDQMLLTFGDISHHGPVLLAWVLLRHTLRPEEVSSVIRRLGHTTLQLGVFQYLTNML
QALGSTGNNCTASTARMCIYGLLSFVITSFEEDTLGSQQHLINAACEVLAAPSLAELFWE
SKPNMGLGVILDSAVGVFPCKTGPLLQLLTALLSDKSTAKKVYTFLDKMSFYTEAYKHKP
NDVISRDDGILWRRQTPKLLYPLGVGQTNLRMPQGCFGQVCEGKQSVGEQGFLVRWEYSY
SSWTLFTCEIEMLLHVVSTADVLAHCERVKPILDLVHKIISTDWTVSDCLLPLTSRIYML
LQRLTSVINPPVDVITSCVNCLIALAARQPGKVWSSLHHTGFLPFASTPLTNMAQTISAE
GMKAGNFGNLLVLIEQPRGDYSVTIAFLRLVTTLVKGQLGSTQSRGLIPCVLLVLKEMLP
TYHKWRYNTYGVRERIGCLILDLVHAILNLSQEVESEGSAPSLQSLCIYSLANTEAGQAV
VNIMGVGVDTINMVLSAQPSSGGSDGPGQVLIQTVKLAFSVTNNVIRLKPQSDTASPLEQ
ALTQHGGHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRD
AFLTRLQSRTEDMRIKVTILEFLTVAVETQPGLIELFLNLETKDGSDGAKEFSLGEWSCL
SVVLELLDSKQQGKYWCPPLLHRAALAFLHALWQDRRDSALSVLRTKEKFWENLTTPLFG
NLPPPSETTEPCVLESCAFVMKIIALEIYYVVSGVLDPSLKAALESFSTKRRYEFWSDYV
RDLVCVACDGEEEGLRSLSESQMLISAWRTLLILSTSHSEVMHLKDDTVRQKLFMDVLEG
TKASLLMSQSDFCLRLGSMMVTLLLILLKQWKSVLVSAPALLPPLSLMLESVLHAEQQLT
DRTKAKLLSALILALQIQGLNGGEITQLPQLLLCVCEMVQDESLALIDSTRHTIQKGDVQ
EDSMETDSPHFQKDQQDSVCVLALHLSKELCRADEDGEQWLQVVRKLPVLPSVLSALELS
LRSKQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEGPSNGATQAFVR
KSQDAPSWPGVYRLSLSLMESLLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQSLAC
LDEADHTVGFLLQLSNFCKEWQFHLPQLLRDVQVNLCYLCQTCTYLLHSKKMLHHYLQAK
NGEGLPPGPHPQRAVQPASKEQVEGEREEAESKALQAVQCSLLKILSKTLATLQHFTPDC
CQILLDQSMDLAEYRTLFVLSFTTPAFDSDVAPSFGTLMATINVALSMLGEIEKRKEPLV
VSEDTQALKSLLMFSMENCFYVLISQAIRCLKDPSVLPRDKQRLKQELSSELSTLLSTLF
RFFRRGSPSSPASGLLPSPQTKPPTPGTKATPEGQEPFIQLVQAFVRHVQR
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcggagatgtgtgtcaggagcagccgagagttatggactatcttgctgggc
agatctgcacttcgagaaccgggccaaatcgaggctgaattggatcggaactgggagaga
cttctgcagggtctgtccttttacaaaccacccagcacatcggcggcagacaagctgaaa
gcagataaagacacaccacaagctctcaaagacttcggactcaggatcagcaaactgctg
ggtttggatgaaaagcaaagcgtgcagattcttcagtgttacctccaggaagactacagg
ggcacacgaaacacacttaagggtgtgctgcaggatgagagacagagtcaagctctgctg
ctgaagatagcagattactactacgaagagagactatgtgttctgcgctgtgttctacac
ctcctcacatacttccaggatgagagacatccatacagagcagagtactccaactgtgtt
agtaaactggagaaagacctagtgtccaactacaggcagcaatttgagtcgctgtccaaa
tcagaagctccaacatgggagacgcatggaaacctaatgacggagaggcaggtgtcccac
tggtttgtgcagtgtctgaaagaacaggccctgctgctggagatcttgttcttgtattat
gcctactttgagatgccacccaatgacctttccaccttcgcacggctgtttaaagaacag
ggctttggacagcgacagaccaatcgacaccttgtggataaaagcatggatgcgctagtt
gaacgcattgggttttttagcgctttgattcttgtagaggggatggatatcgacttcctg
cataaatgtgctctggaggaccgaaccgaacagcatcagttttatgaccaacaggatatt
tgcaaggaagtggaccagatgctgttgacatttggtgacatctctcaccacgggccggtt
ctgttggcctgggttctgctgcgacacacactgcgtccggaggaagtgagctctgtgatc
agacgtctaggacacacgacgctgcagctcggagtctttcagtacctcaccaacatgctg
caggcactcggcagcactggaaataactgtacagcgagcactgcacggatgtgtatttat
gggctcctgtcttttgtcatcacttcttttgaagaagacacgctcggcagccaacagcat
ctgatcaatgcagcatgtgaagttcttgctgctccgagtctggctgagcttttctgggag
tcgaagccaaacatgggtctcggtgtgattttagacagtgcagtgggtgtctttccatgt
aagactggacctttactacagctgctcaccgcattgctgtctgacaaatctacagctaag
aaggtgtacaccttcttagataagatgtcattctacactgaggcctacaagcacaaaccc
aacgacgtgatctccagagatgacggcattctgtggaggagacagactcccaaactcctc
tatcctctgggtgtgggtcagaccaacctgcggatgcctcaaggatgctttggacaggtg
tgtgaaggaaagcagtctgtgggtgagcagggtttcctggtgcgctgggaatattcctac
agctcatggactctcttcacctgtgagattgagatgctgctgcacgtcgtctctactgca
gatgtgttggcacactgtgaacgagtaaagcccattttggatctagttcataagatcatc
agcaccgattggacggtgtccgactgtctgctgccgctcacatcacgtatttacatgctg
ctacagaggttgacctccgttattaaccctccagtagatgtgatcacttcctgcgtcaac
tgccttatcgctcttgctgctcggcagcctgggaaggtttggtccagcctgcatcacacc
ggcttccttcccttcgcctccacccctctgactaacatggcgcagactatcagtgcagag
ggtatgaaggcaggtaattttggcaacctgctggtgttgatcgaacagcccagaggagac
tacagtgtgaccattgcttttttaagactggtgactacacttgtcaagggtcagttgggc
agtactcagagcagaggactcatcccatgtgtgctgctggttctgaaagaaatgctgcct
acgtaccataaatggcgctacaacacctatggagtgcgagagaggatcggttgtttgatc
ctagaccttgttcatgctattctcaatttgagtcaggaggtggagtcagagggcagcgcc
cccagtctgcagtcattgtgtatctacagtctggccaacacagaggcaggacaggccgtg
gtcaacatcatgggtgtgggagtggacactatcaacatggtgctctcagcacagcctagc
agtggtggatctgacggacctggtcaggttctgatacagacagtgaagttggccttctca
gtcaccaacaatgtgatccgactgaaaccgcagtctgatacagcctcacctctggagcaa
gcgctaacacagcatggtggtcacggcaacaacctgatcgctgtgctggcgaagtatatt
taccacaagcatgacccagcgctgccacgtctggccatacagctgctgaagagactcgcc
acggtggctcccatgtccgtgtacgcttgtctaggcagtgacgccgctgcgatccgagat
gcgtttctgacacgactgcaaagcagaactgaagacatgcgtattaaagtcaccatactg
gagttcctcactgtggctgtggaaacacaaccaggactcattgaactcttcctcaacctg
gagaccaaagacggcagcgacggggcgaaggagttttctctgggagagtggagctgtttg
tcagtggtgttggagttgctggactctaagcagcaggggaagtactggtgtcctccactc
ctgcacagagcagcactggccttcctccacgcgctctggcaggacagacgggacagtgct
ctctcggtgctcaggaccaaagaaaaattctgggagaacctcacaactcctttatttgga
aacttacctcccccatctgagaccactgagccatgtgttctggagtcctgtgcctttgtg
atgaagattatcgcccttgagatctactatgttgtcagtggagtgttggatccatccctg
aaagcggctctggagagtttcagcactaagcggcgctatgagttctggtcggattacgtg
cgtgatctggtgtgtgtggcgtgtgacggtgaagaagagggtctgcgctctctgtcagag
tctcagatgctcatctcagcctggaggacgctcttaatactctccaccagtcattctgag
gtgatgcatctgaaggatgacactgtcaggcagaagcttttcatggacgtgttggaaggg
accaaagcatcgctgctgatgtctcagtctgacttctgtctgcgtcttggatccatgatg
gtcacgctgctcctcatcctcctcaaacagtggaaaagtgtgttggtgtctgctccggct
ctacttccacccctttctctgatgttggaaagcgttctgcatgctgagcaacagctcacg
gaccgaaccaaagccaaactcctgtcagctctcatcttagccctgcagatacaaggactc
aatggaggagagattacccagcttccccagctgctgttgtgcgtgtgtgagatggttcag
gacgaatccctggcgttaattgacagcacacgtcacacgatacagaaaggtgatgttcag
gaggacagcatggaaacagacagcccgcatttccagaaagaccagcaagactcagtatgt
gtgttagctcttcatctctctaaagagttgtgtcgggctgatgaggatggtgagcagtgg
ctgcaggtggtcaggaagctgccagttctgccgtcagttctgagcgctctggagctcagt
ctgcgctccaaacagaacctttacttcacagaggcagcgcttcatctgctgctcactctt
gccagaacaccacagggggcagcagcagtggcaggtgctggagtgattcagagcatctgt
cttcctctgctcagtgtctatgagggaccatctaacggagccacgcaggcatttgtgcgt
aagtctcaggacgcccccagctggccaggagtgtacagattgagtctgtctctgatggaa
agtctactgaaaactctccgttacaacttcattaatgaagctctcgactttgtgggcgtg
caccaggagcgcatcctgcagtgtctgaatgcggtgaggacggttcagtctctggcgtgt
ctggatgaggcggatcacacagtgggcttcctgctccagctctccaacttctgcaaggaa
tggcagttccatttgccacagctgctccgagacgtacaggtgaatctgtgctatctgtgt
cagacatgtacatacctcctacatagcaagaaaatgctgcaccattaccttcaggccaag
aatggggaggggcttccaccggggccacacccccagcgtgccgtacagcccgcctccaaa
gagcaggtggagggtgagagagaggaggcggagtctaaagcgctgcaggcagttcagtgc
agtctgttaaagatcctcagcaaaacactggccacgttacagcacttcacacccgactgc
tgtcagatcctgctggaccagtcgatggaccttgcggagtacaggacgctgtttgtgttg
agtttcaccactcctgcgtttgactcggacgtggctccgtcgttcgggactctcatggcc
actattaatgtggcgctgagcatgctgggagagattgagaagaggaaagagccgctcgtg
gtctctgaggacactcaagcgctgaagtctttgctgatgttctccatggagaactgcttc
tacgtgttgatctctcaggctattcgctgtctgaaggatccttcagttttgcccagagac
aaacagagactcaaacaggagctcagctcagagctgagtacattgttgtcgacattattc
cgttttttccggcgcggttccccttcctccccagccagcgggctgcttccctcaccgcaa
accaaaccccccacaccaggaaccaaggccacgccggagggccaggagcccttcatccag
cttgtccaagccttcgtccggcacgtccagcgctag
DBGET
integrated database retrieval system
