Garra rufa (doctor fish): 141292359
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Entry
141292359 CDS
T11039
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
grf Garra rufa (doctor fish)
Pathway
grf03008
Ribosome biogenesis in eukaryotes
grf03013
Nucleocytoplasmic transport
grf03015
mRNA surveillance pathway
grf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141292359 (nxf1b)
03015 mRNA surveillance pathway
141292359 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
141292359 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
141292359 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141292359 (nxf1b)
03009 Ribosome biogenesis [BR:
grf03009
]
141292359 (nxf1b)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
141292359 (nxf1b)
mRNA cycle factors
Stress granule specific factors
141292359 (nxf1b)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
141292359 (nxf1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
UBA_8
LRR_9
LRR_4
RRM_NXF1-2
Citrulline_exp
LRR_SKP2
Motif
Other DBs
NCBI-GeneID:
141292359
NCBI-ProteinID:
XP_073680467
LinkDB
All DBs
Position
19:19961464..19976124
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AA seq
642 aa
AA seq
DB search
MATADDSRYYNEHDDRVGGPKHRNRKGRGPFRAPLYSDQISRPRHRGGHGGGGGGGPGPR
SRLLQDDDGDVTMSEGPQDSGSQRRFNPYNRPQNRRDNRKGGRGGGGGGGGGNDDRGGNR
YGGRGGGGGGGGGSDGRKNWFKMTIPFGKKYEKDWLLSSLQSVCSMPFHAVHYHTDGNKA
QFYVEDATTANALFKVSRKITDKDGYKVTVIMNSCPPPTLIHTDLKAADLEHLKQCMAKR
FDGSQQALDLNNIRVDPDLVSQNIEVTLNRRNSMLAVIKIIEENIPELICLNLSNNRLYR
LDDVADIVNKVPNLKILNLSHNELKTERELDKLKGLKLVELSLEGNPLSGHYKNQADYVS
AIRERFPKLLKLDGHVLPPPIGFDLEVAPPTLPPSKASYFGSEEIKNIILCFLQQYYSIY
DSGDRQPLLDAYHDGAAFSLIIPFTLQNPSKSSLGEYQKDCRNIRRMKDDPTTRFRLIKH
TRLNVVAFLNELPKTQHDIASFIVDVNTYTATLLAFTVSGVFKEIDGKSRDSYRAFSRVF
IAVPAGNAGLCIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLAAFSLK
SGMNLEWSQKCLQDNDWDFDRAAQIFTGLKAQGKIPDVAFVK
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcagacgactcgcgctactataatgagcacgatgaccgtgttggtggacca
aagcatcgtaaccgtaaaggcagaggccctttcagagcccccctgtacagcgatcagatt
tctcggccgaggcatcgaggcggtcacggtggtggaggtggaggcggtcctggacctcgg
tccagactcctacaggatgatgatggagatgtgaccatgtcagaaggtcctcaagacagt
ggctctcaacgcagattcaatccatataaccggccacagaatcgcagagacaatcgcaaa
ggtggacgtggtggtggaggcggcggcggcggtggaaatgatgatagaggtggcaatcgt
tatggaggcagaggtggtggtggcggcggcggcggtggttctgatggaaggaagaactgg
tttaaaatgactattccctttgggaagaaatatgagaaagattggcttttgtcttcgctt
cagagcgtctgttccatgccattccatgccgttcactatcacactgatggcaacaaggcc
cagttttatgttgaagatgccacaactgctaatgccttgtttaaagtgtcacggaaaata
acagacaaagatggatataaggtgactgttattatgaacagctgcccacctcccactttg
attcacactgatctgaaagctgcagatctggagcatttgaagcaatgcatggccaaacgc
tttgacgggtcacagcaggctcttgatctgaacaacatcagggtcgatccagatttggtt
tctcaaaatattgaggtcactttaaatcggaggaactcaatgttggcggttatcaaaata
attgaggagaacattcctgagctgatttgtctgaacctgagtaacaaccggttgtacagg
ctggatgacgtggcagatattgtcaacaaagttcctaacttgaagattctcaacctatcg
cataatgagctgaagacagagagagaacttgacaaactaaagggtctgaagctggtggaa
ctctcactggagggaaatccgttaagtggacactacaagaaccaggccgactatgtcagt
gccattcgggaacgattccccaagctgctcaaactggatggacacgtccttccgcctccc
attggttttgatttggaagtcgctcctccgactcttcccccctccaaggctagctacttc
ggctctgaagaaatcaagaacatcattctctgcttcctgcaacagtattacagcatatat
gactcaggagacagacagcccctattggacgcctaccatgacggtgcagctttctccctc
atcattcccttcaccctgcagaacccctcaaagagtagtttaggggagtatcagaaagac
tgtcgcaatatcaggcgtatgaaagacgaccccactacacggtttcgtttgattaaacac
acgcgattaaacgtggttgctttcctgaacgaactccccaaaactcaacatgacatcgct
tccttcattgtagacgtcaacacctacacagctacattgttggcatttacagtcagtgga
gttttcaaagagatagatggcaaatcgcgagactcatacagagccttctcccgggtgttc
atcgctgttcctgcagggaatgctggtctgtgcattgtgaacgacgagctctttgttcga
aatgccaccacggaggaaattcgacgtgcgtttgttgctcccgcccccacgccgtccagc
agccctgtgcccactctgtccgccccacaacaagaaatgcttgctgccttctccctaaag
tctggcatgaacttggagtggtctcagaagtgcctacaagacaacgattgggattttgac
agagctgcccaaatcttcaccggccttaaggcacaaggaaagatcccagatgttgcgttc
gtcaaatga
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