Garra rufa (doctor fish): 141292406
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Entry
141292406 CDS
T11039
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141292406 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141292406 (rbm22)
Spliceosome [BR:
grf03041
]
Complex B
Other components
Prp19-related factors
141292406 (rbm22)
Complex C
141292406 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
Nup35_RRM_2
RRM_occluded
zf-CCCH_2
RRM_3
zf-CCCH
RRM_YTH1
zf-CCCH_4
RRM_7
zf-CCCH_10
zf-CCCH_12
Calcipressin
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
141292406
NCBI-ProteinID:
XP_073680522
LinkDB
All DBs
Position
19:15872180..15881758
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AA seq
426 aa
AA seq
DB search
MATSLGSNTYNRQNWEDSDFPILCQTCLGENPYIRMTKEKFGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDEVPRSDVNKEYYTQN
MEREIANSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKSITTLYIGGLG
EDVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQSAETAAEKSFNKLIINGRRLNV
KWGRSQAARGKEREKDGVTESGIRLEPVPGLPGALPPPPVSDEDASTNYFNLAPTSSPAV
MNLGLPPPPGVAMPPPPGFGPPMFHTMDPMAPPMPPPMAMRPPGQVHYPSQDPQRMGAHA
SRHGGP
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtctttaggttctaatacttacaacaggcaaaactgggaagattcggatttt
cccattctctgtcaaacatgcttgggagaaaacccttacatccggatgaccaaagagaaa
tttggcaaggagtgcaagatctgtgcacgtcccttcacggtgttccgctggtgtcctggg
gtcaggatgcgctttaagaagacagaagtatgtcagacctgcagtaaaatgaagaatgtt
tgtcaaacctgccttctggatctagaatatggtttgcccattcaggttcgtgacactggg
ctgtccgttaaagacgaagtaccgagatcagatgtgaataaggagtattacactcagaat
atggagagagagatcgctaactctgatggcaccagacctgtgggtctgcttgggaaggca
cccagcagcagcgatatgctgctgaaactagctcgtaccacaccatattacaagaggaac
agaccacacatctgttccttctgggtgaaaggagagtgcaagagaggcgaagagtgtcca
tacaggcatgaaaagcccacagatccagatgatccattggctgatcagaatattaaggat
cgttattatggaattaatgatcctgtggctgacaaactcctgaagcgggcctccaccatg
cccagactagacacaccagaggacaaatccattaccacactctatatcggagggctggga
gaagacgttacagattctgagctcaggaatcacttctatcagtttggggagattcgtacc
atcaccatcgttcaaaggcagcagtgtgctttcatccagtttgccacacggcagtctgca
gagacggctgcagagaagtccttcaataaactcatcattaatggacgccggcttaatgtt
aaatggggcaggtcacaggcagctcgaggaaaagaaagagagaaggatggggtgacggag
agtggaatcaggttggagccagtgcctggcctccctggtgctctgcccccaccccctgtg
tctgatgaagatgcctccaccaactacttcaacctggctcccaccagctcccctgctgtc
atgaacttgggacttcctcctccacctggggttgccatgcccccaccacctggttttggt
cctcctatgttccacactatggatccaatggccccaccaatgccccctccaatggccatg
aggccccccggacaggtccactacccatcccaggatcctcagcggatgggcgcccatgca
agtcgtcacggaggcccttag
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