Garra rufa (doctor fish): 141292517
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Entry
141292517 CDS
T11039
Symbol
rnf180b
Name
(RefSeq) E3 ubiquitin-protein ligase RNF180
KO
K15708
E3 ubiquitin-protein ligase RNF180 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141292517 (rnf180b)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141292517 (rnf180b)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141292517 (rnf180b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF180_C
zf-RING_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
CRISPR_assoc
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
141292517
NCBI-ProteinID:
XP_073680646
LinkDB
All DBs
Position
19:25196953..25203525
Genome browser
AA seq
462 aa
AA seq
DB search
MATSLVTEEQEQSETLEDPTNLRCRKCRRCLIDSTSLLKVVTSGEAAATCNVWHLNVESL
PDWILANVDQASWTVGKLNCQYCGARLGGFNFINCSKCSCGHDTAVHLSKSRVDQDLKPP
VLLTRLGRTREHTMRGKNEVESLPRTISSSSSPSATLNLPFTVSHVASSETEVEVESSEG
PQILETVERGTDVSLPSELQPQLSDYQESLEQQQAGSASQSRSSLDRAVNPEGVRLRVTE
EPLRNNSPNLESKLSKREKNRLKSLKRKQRKKERWIQRQQEAKDLALKWDLTGSDDEERE
GYTCAVCLDVYYSPYKCHPCSHVFCEPCLRTLAKNRPSNTPCPLCRTLISHVLFQEELSQ
TTKTCFPKVYRSRHETFQKTNYSKWPLPNCPKRFRIFWGFQRHGGPASRWQFPHRAFGLD
ALDLGDMWGWPFDIDFVIISIYSLHWVMAFIIFCGLCYFLLL
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggctacttctttagtgactgaagaacaagaacaatcagagacactagaagatccaaca
aaccttcgctgcagaaagtgtcgcagatgtctgatagactcaaccagccttcttaaggta
gtaacatcaggggaggctgcagccacatgcaatgtgtggcatttgaatgtcgaatctttg
ccagattggattttggcaaatgttgatcaggccagttggacagtggggaaattaaactgc
cagtactgtggagctcgcttaggaggctttaattttataaattgctccaaatgctcctgt
ggacatgatacagctgtgcatctcagtaagagtcgtgttgatcaggatctaaaacctcca
gttcttttgacaagactaggaaggactagagaacataccatgagggggaagaatgaggtg
gaatctctccctcggacaataagctcatcctcgtctccttccgcaaccctcaacttgccc
tttactgtgtcccatgtggcttcatctgaaactgaagttgaggttgagtcaagtgaagga
ccacagattcttgagactgttgagagaggcacagatgtttctttaccttctgaattgcaa
ccacagctgtctgattatcaggagagcttagagcaacagcaagcgggttctgcttcccag
agtagaagctctctggacagagctgtgaatccagaaggggtcagactcagagtgacggag
gagccattaagaaacaactcacccaacctagagtcaaagctttccaagagagagaaaaac
cgcctgaagagcctaaaaaggaagcaaaggaagaaagagcgttggattcagaggcagcaa
gaggcaaaagatctggctttgaagtgggacctaacaggcagcgatgatgaagagagggag
ggatacacatgtgccgtgtgtttagacgtatattacagcccttacaagtgccatccttgc
agtcatgtgttctgtgagccctgtttgagaactctggctaagaacaggccaagcaatacc
ccgtgtcccctctgtaggaccctcatatcccatgtgctctttcaggaagagctcagtcaa
accacaaagacttgcttcccaaaagtgtatcggtcaagacatgagacctttcagaagacc
aactattccaaatggcctctgcccaactgtccaaagcgtttccggatcttttggggattt
cagagacatggaggcccagccagtcgctggcagtttcctcacagagcatttggcctggat
gcgttggatctaggggacatgtggggctggccgtttgacattgactttgtgatcatctct
atttactctctgcactgggtgatggcgttcatcatcttctgtggcctctgctacttcctc
cttctctga
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