Garra rufa (doctor fish): 141293262
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Entry
141293262 CDS
T11039
Symbol
nwd1
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
grf Garra rufa (doctor fish)
Brite
Domain-containing proteins not elsewhere classified [BR:
grf04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
141293262 (nwd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
NACHT
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
nSTAND1
AAA_16
Beta-prop_Nup120_160
DUF4062
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
NPHP3
AAA_22
Beta-prop_CAF1B_HIR1
NPHP3_N
Beta-prop_SCAP
NPHP3_hel
ATPase_2
AAA
Beta-prop_LRRK2
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Bac_DnaA
ResIII
AAA_25
Motif
Other DBs
NCBI-GeneID:
141293262
NCBI-ProteinID:
XP_073681394
LinkDB
All DBs
Position
20:complement(38994416..39027944)
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AA seq
1621 aa
AA seq
DB search
MAVVEMSEALGLEALRGQSADALQPVSKMLRVFISSTHSDMKNERNAFWEKAYSELQTHC
QSLGLVFEVVDFRCGVRDVFTADHLSTELSVKEIESCQRISEGPTFIALLGNQYGHRPIP
RLIPETEFELLVSKLPKDSESLKLLNQWFSKDSNSVPPTYILQPITAHYPHYNDRGSESG
QLRDNDVISWNLTESRLLQALRTAAQQAERDGDVSVDQKHTFFKSVLEYEMEHGFLKTQK
DASSVLFFRELPRLSKRANKKNFAKFLLDVTADGLLDTEARELLTDLKQRICNTGRLQPL
CMELSKGAMDPSRKEHKEYLGKLCEQVTSQMKELISRNALENSGTCSTVEPGWSWLKQEI
FHHTVLGEKKCSVFKGRDSILGKICITMWESIDARHEPILVHGPSGVGKTALLCKLAQEI
RGVVDHRGVIVLRLLGTSPLSSDVDSVLRGVCLQVCGALGLQFPYPHISNTHEDLVRFFH
SMLEEVSKQGDTLLLILDSLDQLLETNKPHQLDWIPKAIPPNVQIVLSISDDYAEKCKSL
VTAEQNIFNVELLTDDQGKDIIDAYMSAAGRKLTSEQSDTILNCFQQNRSPLHLKLMLDT
AKQWSSYTSMSNVRLSVSAQEVMTQVVESLEENHGKKLVSRTLCFILLSRNGLSEAELQD
LLSLDNDVLAEIYKYWLPPSHTLLRFPRLHWSRLRHDLSPHLTERWEGGLILLGFTHRQF
AELVRKRYLSHDIKADMHTILAEYFSGQWSRGQLRPILLPSLNTLLNADRKVPAQPLWFT
GEVANMRKLHELPYHLAHAGKWEELRQSVLGSLDWLCCKTLQCGVSCVIQDLSLCTDLTV
CPEIQMLKETFLLLKPSLDFSDGRVDPSLLVTEIFTRLQGLTDLYPSMIGQLCSQCVDWF
GSCPDPVLVPKCSFFQAPGGPLKSTLTGFTKGVKAVVLCSKRELLVAGSEDGLIIVWSLN
HLQTLHTLTGHTAGVLSLKLMDKTNHCLSTGLDGTLRKWCLISGQQLFCITNAVSVQTHT
PTHVHMIEEKKIIITNPSSLVKAWHLDTAEPLYEVTAGVCSVLGVVGDLIACICSEGALC
FYDISSGLQHSQTPLPCSAGHHDITCSLTLTKYSKILIAFGEGRLHSVWSHGIESVVDLP
SPALFLRTSEDEKLLFAGCDRTLCVFIVTLTSVQKVLDLHHDASVLCAVSSSEGSEIITS
AQDRILRVWSVPTGALLDWIGVMDSAVSSLAVHQRTIISASVITNQLKVWQLDYNTKHRS
KTFIPAYCPLVVLSKDGDTVFYVKEGNSTEVFAWSCSEGLRSGSMDVSSEVCCMELAQQK
RLLFCGLRTGTILIYPLDFAPETLCLPPPENLPMVRSMAISPREDRMAVAYEDAVCLFEI
TSRDSFPCVEGPFERYSLCLLHSPISAMALLSDCRLLYGTFGGEVVIYDFKSATAAELDH
HGAAITCITMSNWDAQALIGSQDCVQKLWNLSPVLLNHTMEYKGFYFEGVLCAVFSVNDK
YVFTGSLDKTIKVWDVSTGCLLYIQFVYSPVIRMMPHKAGFVAMSQHGSFIKEGFRCPDT
LQPGYNPLRNFRAHYRVTSREKSTNAPHTVINELPDYNPAQFNFIGIGLIKSKPSNTCVL
L
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggtggagatgagcgaagctcttggattggaggctctgcggggacaaagcgcg
gatgctcttcaaccagtttcaaaaatgttgcgggtgttcatcagctccacacactcagac
atgaaaaatgagagaaatgcattctgggagaaggcctattctgagttgcagacacactgt
caaagcttgggtctcgtctttgaggtagtggatttcagatgcggagtgcgtgacgtcttc
accgctgatcacttgtccactgaactaagtgttaaagaaatcgaatcctgtcagagaata
tcagaaggcccaacttttattgctcttctcggtaatcagtacggccatcgccccatccca
cgtctcataccagagacagagtttgagttgctggtttcaaagcttcccaaagattcagag
agtttaaagctgcttaaccaatggttctccaaagacagtaactcagtaccacccacatat
atcctccagccaatcacagcccactatcctcattacaatgacaggggttctgagagcgga
cagctgcgtgataatgatgtcatatcctggaatctgacagaatcacgactgctgcaggct
ctccgcacagctgcccaacaggctgagagagacggggatgtcagtgttgaccaaaagcac
acgtttttcaaatctgtcttagagtatgagatggagcacggctttctcaagactcaaaag
gatgcatcatctgtgctgtttttccgtgaactgcctcgacttagtaaaagagccaacaag
aaaaactttgcaaagtttcttctggacgtcacagccgatggcttgctggacacagaagcc
cgggagctcttgaccgacctgaagcaacgcatctgcaacacaggtcgcctgcaacctctc
tgcatggagctcagcaaaggagctatggacccgagccgcaaagaacacaaggagtacctg
gggaaactgtgtgagcaggtaacatcccaaatgaaggaactgatcagcaggaacgctctg
gaaaattcaggaacttgtagcacggtagaaccaggatggtcttggttaaaacaggagatc
ttccatcacacagtgctaggtgagaagaagtgctccgtgtttaaaggaagggacagcatt
ctgggaaagatctgcattaccatgtgggagtccattgatgcacgccatgaacccattctg
gttcatggaccttcaggggttggtaaaacagctttgctttgcaaactggcacaagaaatc
cgaggcgtggttgaccatcgaggagttatagtgctgaggttgctgggaacatctccactc
agctcggatgttgactctgttctcagaggcgtttgtcttcaagtgtgtggagctctaggg
ttgcagttcccctaccctcatatttccaacacgcatgaagacctagtccgtttttttcat
tccatgctggaagaagtgtcaaaacaaggagacacactcctactcattctagactcattg
gaccagctgttagagacaaacaagcctcatcaactagactggatacctaaagcgattcct
cccaatgtacaaattgtactctctatttctgatgactatgctgagaaatgcaaatctttg
gttacagcagagcaaaacatctttaatgtggagcttctcacagatgatcaagggaaagac
attattgatgcttacatgagcgcagctggacgcaagctgacctcagaacagtcagacacc
atcttaaactgctttcagcaaaaccgaagccctttgcatctgaaactcatgctagacact
gccaaacagtggtcctcttacacctccatgtctaatgttcgcctgagtgtctctgcacag
gaagtgatgacacaagttgtggagtcacttgaggagaatcatgggaagaagctagttagt
cgtactctgtgcttcatcttgttatcaagaaacggtttatcagaagcagagttacaggat
ctcctatcattagacaatgatgttctggccgaaatttataagtactggcttcccccaagc
cacacactcctacgcttcccacgacttcactggtcacgtctccggcatgacctgagccct
catctgacagagagatgggagggtggtctaattctgctgggtttcacccacaggcagttc
gcagagctggtaaggaagagatatttatcacacgatataaaagctgacatgcacaccatc
ctcgctgagtatttctcaggacagtggagtcgggggcagctcaggcccatccttctgccc
tcactaaatactctactcaatgctgacagaaaggtaccagcccagcccttgtggttcact
ggagaagtcgccaacatgcggaagcttcacgaactgccctatcacctcgctcatgccggc
aaatgggaggagctacgccagtcagtgcttggcagtctggactggttgtgttgtaaaact
ctgcagtgtggtgtgagctgtgttattcaggacctgtcactttgcactgacctcactgtc
tgtcctgagatacaaatgctgaaggagacatttctgcttcttaagccttcgctagatttt
agcgacggccgtgtggatccctcacttttggtgacagagatcttcaccaggctacagggt
ctcactgatctctatccctccatgattggacagctgtgttctcagtgcgtcgactggttt
ggttcctgtcctgacccagtgcttgtgcccaaatgcagcttctttcaggcccctgggggc
ccactgaaaagcaccctcacaggcttcactaaaggggtgaaggctgtggtgctgtgctca
aagagggagctgcttgtagcaggttcagaggatggcctgatcatagtctggagtctaaac
catctacagactcttcacactcttactggacacactgcgggggtgctgtccctgaagctg
atggacaaaaccaatcactgtctgtctactggactcgatggcacactaagaaaatggtgt
ctgataagtggacaacagcttttctgtatcactaatgcagtgtctgtccaaacacacacc
cctacacacgttcatatgatcgaagaaaagaagattatcataaccaacccaagcagccta
gttaaagcttggcacttggacactgcagagcccctgtatgaggtgacagcgggggtttgt
tctgttcttggtgttgtgggagatttaatagcatgcatatgcagtgagggggcgctctgt
ttttatgacatatccagtggcctgcaacactcccagaccccccttccctgctctgctgga
caccacgatatcacctgctctctgacactcaccaaatactccaagatactcattgctttt
ggagaaggccgtctacattcggtttggagccatggtattgagtctgtggttgatcttccc
tctccagctttgttcctcagaacatctgaggatgaaaaactgctgtttgcaggttgtgac
agaacattgtgcgtgttcattgtgacgctgacctcagtgcagaaggttctggatcttcac
catgacgcgtcagtcctatgtgccgtctcaagcagtgaaggcagcgaaatcatcacaagt
gctcaagatcggattttacgggtgtggagcgtacccacaggagctctgctggactggatc
ggtgtgatggattctgctgtgtcctctttggctgtacatcagcgcactattatctctgcc
tccgttattaccaaccagctcaaagtatggcagctggactacaacaccaagcacaggagc
aaaacgttcatcccagcatactgccctctagtggtcctgtcgaaagacggtgatactgta
ttctacgtgaaggaaggaaatagtacagaggtcttcgcctggagctgttcggaaggtcta
cggtctggcagtatggatgtttcctcagaagtgtgttgtatggaattagcccagcagaaa
cgcttactcttttgtggactacggactggtaccatccttatttacccactagactttgct
ccagaaaccctgtgcctgccacctccagaaaacctaccaatggtacgcagtatggccatc
agcccgcgggaggacagaatggctgtggcgtatgaggatgcggtttgtctgtttgagatc
acatcgagagacagttttccctgtgtggaaggtccgtttgagaggtactctttgtgcctt
ctgcattccccaatctctgccatggcccttctgtccgattgcaggctgctatatggaaca
tttggtggtgaagtggtgatctacgactttaagagcgccacggcagctgagctagatcat
cacggtgcagccataacctgcatcaccatgagcaactgggatgcacaagcattgattggc
tctcaagactgtgttcagaagttgtggaatctgagtcctgttttgctgaatcacaccatg
gaatacaagggtttttattttgaaggcgtcctatgtgctgtcttctcagtaaatgataaa
tacgtcttcactggatccctggacaaaaccatcaaagtctgggatgtctctactggttgt
ttactgtacatccagttcgtctactctccagtcataagaatgatgccacacaaggctgga
tttgttgccatgtcccagcatggctctttcatcaaggaaggcttccgctgtccagacacc
cttcaacctggatacaaccccctccgaaacttccgagcacattacagagtcacctctcgg
gaaaaaagcacgaacgctccacacactgtgatcaacgagctcccagattacaacccagct
cagttcaatttcatcggcatcggtttgataaaaagcaaaccatccaacacgtgtgttctt
ctttaa
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