Garra rufa (doctor fish): 141293411
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Entry
141293411 CDS
T11039
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a
KO
K14966
host cell factor 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03083
Polycomb repressive complex
grf04980
Cobalamin transport and metabolism
grf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
141293411 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
141293411 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
141293411 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141293411 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141293411 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
grf03029
]
141293411 (hcfc1a)
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141293411 (hcfc1a)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
141293411 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
141293411 (hcfc1a)
MLL-HCF complex
141293411 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
141293411 (hcfc1a)
Mitochondrial biogenesis [BR:
grf03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
141293411 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_5
Kelch_3
Kelch_4
Kelch_1
Kelch_6
fn3
YqgF
Motif
Other DBs
NCBI-GeneID:
141293411
NCBI-ProteinID:
XP_073681548
LinkDB
All DBs
Position
20:16925319..16947750
Genome browser
AA seq
1800 aa
AA seq
DB search
MTSPGSVVPGTTGAPLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKPKSPKNGAPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
PGSNVVGWDIPVTYGVLPPPRESHTAVVYTEKVTKKSRLVIYGGMSGCRLGDLWTLDIDT
LTWNKPAISGAAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSLSWETVLMDTLEDNIPRARAGHCSVAINNRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPNPPSRVQLVRANTNSLEVSWGAVSTADMYLLQLQKYDIPSATAATSPALNAAPSL
PGNSPKSPAPAAAAPSAQSLPQSGITLVPQAASPTASILPSTPASPVAASTARGPAILKV
AAPQSGTGTSIVTVRQATQPGKSPVTVTSLPAGVRMVVPSQTTQGTPIGSSPQMSGMAAL
AAAAAATQKIPPSPGATVLNVPAGATLVKTMAMTPGSTTVKVASPVMVSNPATRMLKTAA
AQVGTPTVSSPTTGARPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPLSMGGNL
ISNLGKVVSVVQTKPVQTAAVTGQASSNPLTQIIQTKGPLPPGTILKLVTSADGKPTTII
TTSQAGGTGNKPTILGISGMSPSTTNKPGTTTIFKTIPMSALQQGAGVTSSTGVKSPITI
ITTKMMTSGTPGKIITAMPKIGTAAGQQGLTQVVLKGAPGQPGTILRTVPMGGMRLVSPV
SGVKPTVTTLVVKGTTGVTTLGTVTGTVSSSLAGGSLASANASLATPITTLGTIATLSSQ
VINATAVSATQSNLATVSSSMQPTQVTLITTPSGVESQPGQDLPVSILASPTSEQPTSTE
SGAGDASGSVTLVCSNPPCETHETGTTNTATTATSNMGAGPASTVQRVCSNPPCETHETG
TTNTATTASASMGAVQRVCSNPPCETHETGTTNTATTASANTGTAPAGAVQRVCSNPPCE
THETGTTNTATTASSNMGGNQTGTVQRVCSNPPCETHETGTTNTATTSSSNMGGNQTGTV
QRVCSNPPCETHETGTTNTATTSSSNMGGNQTGNVQRVCSNPPCETHETGTTNTATTATC
SMETDEETAQQSGEASESTTSTEGLPSTAAPQSRAITIVTQATPLPGPAVPSISSITESS
SEAGAEPVVRESSEAESLQTEAQAKAEAVAMQAEFQTEAGAVAVAMPSDFQAEAAALPSD
FQGEAIAVAMQAESQAEEGAVAMEHDASSMAEAETAQEQLPTEEMEGVEAASASQAEALT
LPPELMSDGQPTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMS
SGDDQQTHTIPIVLTQQELAALVQQQQQLQAAQQQAAAQAALPTEGLAPADSLNDPSSES
NGHNEMAAAATTTVVGLLPSTSAETLAPSSTLAPVVVASPAKMQAAAALTEVANGIEAAK
QNPPTVTIKPQVKKENQWFDVGIVKVTNMVVTHFYMPADDSAYVEDDSGTIPDYSQMKRV
DLQPGTAYKFRVAGINTCGRGTFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPS
VTSGKITEYSVYLAIQSSQTTEAKPSAPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTT
KPAIIFRIAARNEKGYGPATQVRWLQESNKDGLSAKPAPKRAVSSPDTKGFGQKKARMDQ
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcccccggttccgttgtgcctggaaccaccggagctccactgcagccgcgatgg
aagcgggttctgggatggtccgggccggtaccccgaccgagacacggacacagagccgta
gccatcaaggagctgatggtcgttttcggcggaggaaacgaaggaatcgttgacgagttg
catgtttataatactgcaacaaaccagtggttcataccagctgttcgtggagacattcct
ccgggctgtgcagcttatggttttgtatgtgatggcacacgtctattagtgtttggtgga
atggtggaatatggaaagtacagcaacgacctttatgagttacaggcaagcagatgggaa
tggaaaaaattgaaaccaaaatcccctaaaaacggagcgccaccatgccctcgcctcggc
cacagtttttctcttgtgggcaacaagtgctatctttttggggggcttgccaatgacagt
gaagaccccaagaacaacattcccagatatttgaatgacctttataccctcgagctgcgt
ccgggctccaatgttgtgggctgggatataccggtcacatatggagtactgcctcctcca
agagaaagccacactgctgtagtttatacagaaaaagttactaagaagtcccgtcttgtt
atatacggaggaatgagcggttgccgtttgggagatctttggacgttagatatcgacaca
ctgacctggaacaagccagcaataagcggtgcagctcccctcccccgtagcctccactca
gccaccactattacaaacaaaatgtatgtttttggtggatgggtccccttggtgatggat
gatgtgaaggtggccacacatgagaaggaatggaagtgtacaaacacactggcctgcctg
aatttggactctttgtcttgggagaccgttttgatggacactttggaggacaacatacca
cgtgcacgtgcaggacattgctctgttgcaataaacaacaggctttatgtttggagtggg
cgtgatgggtaccgcaaagcttggaacaatcaggtgtgctgcaaagacctgtggtatctg
gagacagagcgacctaatcctccttctcgggtacagcttgtccgggccaacacaaattct
ttagaggttagctggggagcagtgtctacagcagacatgtacctgcttcagcttcagaaa
tatgatatcccatcagccactgctgccacatcaccagccctcaacgcagctccctccctc
cctggaaactcgcctaagagtcccgcgcctgccgcagctgctccatctgctcagagtctg
ccacaaagtggcatcaccctcgtgccccaggctgcttctcccacagcctcaatcctgccc
agcacacccgcaagtcctgtggctgcctcaacagcacgtggtccagctattttgaaagtg
gcagctcctcagtcaggcaccgggacgtcgattgtcactgtgcggcaggccacccagcct
ggaaaatccccagtcactgtgacatcacttcctgcaggtgttcgcatggtagtgccatca
cagaccactcaaggaacgcccattggcagcagccctcagatgagtggaatggcagctttg
gccgcagctgctgcagccacacagaaaatccctccttcccctggagccactgttctcaat
gtgccggctggggccacacttgttaaaacgatggctatgacacctgggtccaccacagtt
aaagtggcatcacctgttatggtaagcaaccctgctactcgcatgctaaagactgcagct
gcacaggtgggcactcctacagtgtccagtcccaccacaggtgctcggcctattatcact
gtgcacaagtctggcacagttacggtagcccagcaggctcaggttgtgaccacggtggtg
ggcggagtcaccaagaccatcactcttgtcaagagcccgctttccatgggaggaaacctg
atctctaacttgggcaaggtggtgtcagtggtacagaccaaaccagtgcagacagctgct
gtgactggacaggcctcctccaacccactgactcaaattatacagacaaagggtcccctt
ccacccggcaccattttaaaactggtaacgtctgcagatggaaaaccaaccaccataatt
accaccagtcaagcaggtggcacaggaaacaaacccactatcttgggtatcagtggcatg
tcgcccagtaccaccaacaaaccaggcaccaccactatttttaaaacgattcccatgtct
gctctacaacagggagctggcgtgactagtagtacaggagtgaagagccctattaccatc
atcaccacaaagatgatgacatcaggaactcctggcaaaatcattacagcaatgcctaag
attggtacagcagctggccagcaaggcctaacacaggttgttctgaagggagctcctggt
cagcctggaactatcctccgcactgtgccgatgggaggaatgcgtctcgtgtctccagta
tctggggtcaagccaactgtaaccacgctagttgtcaagggaacaactggtgtgacaact
cttggcacagtcacaggaaccgtttcgtccagcttagctggaggaagcttagccagtgcc
aacgcctccctggcaactcccatcaccactctgggcacgattgcaaccctctccagccag
gtcattaatgctaccgctgtgtcggctacacagagcaacctggccactgtctcctcctcc
atgcagcccacccaggtaactctcataactacacccagtggtgttgagtctcagcctggc
caagatctgcctgtttccattctggcctctcccacctctgagcaacccacctctactgag
tctggtgcaggtgatgcttctggcagtgttactttagtgtgctccaacccaccctgtgag
actcacgagaccggcaccaccaacacggccaccacagcgacatctaatatgggcgctgga
ccagctagcacagtacaaagagtgtgctccaacccgccctgcgaaacgcatgaaactggt
acaacaaacaccgccaccacagcatctgccagcatgggtgctgtacagagggtctgctca
aacccaccatgtgaaacccacgagactggcaccaccaacaccgcaaccacagcatctgca
aatacaggcactgctcctgctggcgctgtccagagggtctgctccaacccaccatgtgag
acccacgagacaggcactactaacacagcaaccacagcgtcatctaacatgggtggaaat
caaacgggaacagtgcagagggtctgctcaaacccgccatgtgagacccacgagactggc
acgacaaacacggcaaccacttcttcatctaacatgggtggaaatcagacaggaacggtg
cagagggtctgctccaacccaccctgtgagacccacgaaacgggcaccaccaacacagca
accacatcgtcatctaacatgggcggaaatcaaacgggaaacgtgcagagggtctgctca
aacccaccttgtgaaactcatgagactggcacgacaaacacggcaaccactgcaacttgc
agtatggagacggatgaggaaacagcccaacaaagtggagaggcatcagaatctaccacc
agtacggaaggcctgccatccactgcagctccccagagcagagccattaccatagtcaca
caggccacacctctaccaggaccagctgttccatctatctcttcaatcacggagtcatcc
tcagaggccggagctgagccagttgttagggagagctcggaggcagagtctttgcagaca
gaagcccaggctaaagcggaggcagtcgccatgcaggcagagttccagacagaggcgggg
gctgtagcagtagctatgcccagtgacttccaggcagaggcagcggccttgcccagtgac
ttccagggggaagccatagcggtagccatgcaggcagagagccaggcggaggagggggca
gtggccatggagcatgacgcttcgagcatggcagaggcagaaacggctcaggagcagcta
ccaacagaagagatggagggtgtagaggctgcatcagcatcacaagccgaggcgctgacc
ttgccaccagagctgatgtcagacgggcaacccacaacgctgatggtgactggactgacc
ccagaggagctggccgtcactgcagccgcagaagcagcagcccaggcagcagcaacagaa
gaggcccaagcccttgccattcaggctgtactacaagcagcacagcaagctgttatgagc
tcaggtgacgaccagcagacccacaccatacccatcgttctgacacagcaggagctagca
gctttagttcagcagcaacagcagctccaggcagcccagcagcaagctgctgctcaggcc
gctctgccaaccgagggcttggctccggctgacagccttaatgatccctcctcagaaagc
aatggacacaatgagatggctgccgctgccacaactacagtagtcggactgctgcctagc
acctcagcagagaccttggctccatccagcacgctagcacctgtggtagttgccagtcca
gctaagatgcaggcggctgcagctctgactgaagtggccaatggtattgaggctgcgaaa
caaaaccctcccactgttaccatcaaacctcaagtgaagaaagaaaaccagtggtttgat
gttggcattgtcaaagtgaccaatatggtagtaacacatttctacatgcctgcagatgac
tctgcttatgttgaggatgattctggcacaatccctgattacagccagatgaagagggta
gaccttcagcccgggactgcctacaaattccgtgtggcgggtataaacacgtgtggccgt
ggaaccttttctgaaatatctgctttcaagacctgcttaccgggcttcccaggggcacca
tgtgccataaagatcagtaagagtccagacggtgcccaccttacatgggagcctccgtcc
gtgacatcaggaaagatcacagagtattctgtgtatctagccatccagagcagccagacc
accgaggcgaaaccctcggccccggcccaacttgccttcatgcgtgtttactgtgggcca
aatccctcctgcctggttcagtcctccagcctttccaacgcccacatagactacaccacc
aaacccgccatcatcttccgcatagctgcacgcaacgagaaaggttacggcccggctaca
caagtgcgatggcttcaagagtctaacaaagatggcctttctgcaaagcctgccccaaaa
agagcagtttcttcaccagatacgaaagggtttggtcagaagaaagcaagaatggaccag
taa
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