Garra rufa (doctor fish): 141293572
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Entry
141293572 CDS
T11039
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
grf03015
mRNA surveillance pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141293572 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
141293572 (eif4a3)
03015 mRNA surveillance pathway
141293572 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141293572 (eif4a3)
03041 Spliceosome [BR:
grf03041
]
141293572 (eif4a3)
03009 Ribosome biogenesis [BR:
grf03009
]
141293572 (eif4a3)
03012 Translation factors [BR:
grf03012
]
141293572 (eif4a3)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141293572 (eif4a3)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141293572 (eif4a3)
mRNA cycle factors
Stress granule specific factors
141293572 (eif4a3)
Spliceosome [BR:
grf03041
]
Complex C
Other components
EJC/TREX
141293572 (eif4a3)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
90S particles
Helicases
141293572 (eif4a3)
Translation factors [BR:
grf03012
]
Eukaryotic type
Initiation factors
eIF-4
141293572 (eif4a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
141293572
NCBI-ProteinID:
XP_073681698
LinkDB
All DBs
Position
20:1909114..1919046
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAAAPVRKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccgctgctcccgtgaggaagaggctcctgaaggaggaagacatgacgaaa
gtcgagtttgagacgagcgaagaggtagatgtaacgccgacgtttgacacgatgggcctg
agggaagatttactgcgcgggatctacgcttacggttttgagaagccttcagccatccag
cagagagccatcaaacagatcatcaagggacgagatgtcatcgcccagtcacagtctgga
actggtaaaacagccacattctgtgtgtcagtgctgcagtgtttggatattcaggttcga
gagactcaagcgctgattttggctccgaccagagagttagcaggacagatccagaaggtg
ctgctggcattgggcgactacatgaacgttcagtgtcacgcatgtatcggaggcacaaac
gtcggcgaggacatcaggaagctggactacggtcagcatgtggtcgctggaacacctgga
cgagtatttgacatgatccgcaggaggagtttgaggactcgtgccattaagatgctggtg
ttggatgaagcagatgaaatgctcaacaagggttttaaggaacagatctacgacgtgtac
cgatacctgccgcccgccactcaggtgtgtctgattagcgccacgctgccacacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgaa
ttgacgctggagggtattaagcagtttttcgtggccgtcgaacgagaggagtggaagttc
gacactctgtgtgatctgtacgacacgctgaccatcacacaggccgtcatcttctgcaac
accaaacgcaaggtggactggttgacggaaaagatgagagaggcaaacttcacagtgtcg
tcgatgcatggagacatgccacagaaagagcgagagtccatcatgaaggagttcagatct
ggagccagtcgagtgctgatctccacagacgtttgggccagaggtctggatgtgcctcag
gtttctctcatcattaactatgaccttcccaacaacagagagctgtacatccacaggatt
ggtcgatcgggtcgttacggcaggaagggtgtggccatcaactttgtgaagaacgacgac
atccgtatcctgcgtgatattgagcagtactattccacacagattgatgaaatgcccatg
aacgtggctgacctgatctga
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