Garra rufa (doctor fish): 141293964
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Entry
141293964 CDS
T11039
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
141293964 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141293964 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141293964 (pcdh20)
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141293964 (pcdh20)
Cell adhesion molecules [BR:
grf04515
]
Cadherins
Protocadherins
141293964 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
FAM176
DUF4139
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
141293964
NCBI-ProteinID:
XP_073682136
LinkDB
All DBs
Position
20:complement(4391800..4396034)
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AA seq
882 aa
AA seq
DB search
MWNTKRGTWLYSKGELWGLFVLLLYTSPLSCSSNFSHLIYKIKEGLPRGTLIGAIGADLK
LDLSVNPPRSFNLELKTTSQQYVSLNNTTGELFTSAVEIDREALCAESHEGQGCALFLDV
LILPQQYFQLVKIKIVIEDVNDNRPHFPVDEIRVSVPENAPVNARFAVEQSAVDPDIGIH
SVQTYWLVNDYGVFTLDVEENEGGELTPFLIITESLDRETQAEYVTDIIAEDGGSPPLLG
TATLRIIITDVNDNCPKFIESQVNVTLYGNATKGMQLARLQAYDPDEGANALITYTFSER
VTQESRNLFHLDTNSGLLKLAGKIDNNTGKLYKLIILANGPTCIPEVATVTVHVIRQLSG
PPAVVPRYIASEKDGVVSISESELPFSPIAFFTIKNTEPQQKIECLLEGTGPFRLVPYER
VKNEYLLETTEVLDYEQQQDYEMVIVVRNPHGLVVNTVVKVHVLDVNDNAPIFKQSFIDV
AVEENNPPNTFLAQLQATDADSESRGEVYYLLGADAPTIFDLDRSTGVLTVSTSLDREEK
ETYRFMVRAVDRGTPRKESIATVIITVQDRNDNSPRFINKDFTFFVPENFPGFGEIGVLT
VTDADAGENGWVALSILNGSDIFVIDTGRGALRAKTPLDREQQGTYYVWIEAIDGGEPSL
SCITMVTVLLLDVNDNPPTVLFPQSNQSYMLVLPNTLPGTSITEVYAVDRDTGMNAVIAY
SIIKRTDGEPGSFDIDPYTGNITLRKTLSNRGLYSLWVKVRDHGQPELYSTVLVNLFVNE
TVSNETLIQSLLPRSVDIDHGELPPDKEGRKGEQVPNMCGEYQVLLLALTATCLGLFLTV
VSLVTYICCKKRKPKKKRLDIEIPLKLNHEMVDKNPMEISNI
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacactaaaagaggaacctggctttacagcaaaggagagttatggggtttgttc
gttctcctcttgtacaccagtcccctctcctgttcatcaaatttcagtcacctcatctat
aagataaaagaaggattacctagagggacactcataggggctatcggtgcggatttaaaa
ttggatctttccgtcaaccctcctcgctcattcaatctggagctaaagacgaccagccag
cagtatgtgagtctgaataacacgacgggggagctgttcacatctgccgtggagattgac
agagaggctctgtgcgcggagtcccacgagggccagggctgtgcactctttctggatgtg
ctaatccttcctcaacagtactttcagctggttaagattaaaatcgttatcgaggatgtg
aacgacaaccgcccgcatttccccgttgatgaaatcagggtgtctgtgccagagaacgca
cctgttaatgccaggttcgctgtggagcaatccgcagtggatcccgacattgggattcac
agcgttcagacatactggcttgttaatgactatggagttttcacattggatgtagaggag
aacgaaggcggtgaactgacgccctttctgatcattactgagtctctggatagggagacg
caagctgagtatgtgactgacatcattgctgaggatggaggatctccgccgcttttgggc
actgcgactttgaggattatcattacggacgtcaacgacaactgccccaagtttatagag
tcacaagtgaacgttactctttatggaaatgctactaagggcatgcagctggctcgtcta
caagcctatgacccagacgagggagctaacgctttgatcacatacaccttcagcgaacgg
gtcacccaggaaagcagaaacctgtttcatttggatacaaactctgggttacttaaacta
gctggaaagattgacaacaacacagggaaactctacaaactaatcattttggccaacggg
ccaacttgtattccagaagtcgcaacggttaccgttcacgtcatcagacagctctcaggg
cctccggcagttgtcccacgctacattgcttcggagaaggatggcgttgtgagtataagt
gaatcagagctgcccttttcacccattgctttttttacaattaaaaacactgagccacaa
cagaagatagagtgtcttcttgaaggcacaggtccgtttaggcttgtaccgtatgagcgg
gttaaaaacgagtacttgcttgagaccactgaggtattggattatgagcagcagcaggat
tatgaaatggttattgtggtgcgtaaccctcatggattagtagttaacaccgtagtgaaa
gtccacgtgttggacgtcaacgacaatgctcctatattcaagcaatccttcattgacgtc
gcagtagaggagaacaacccgccaaatacgttcctcgctcagcttcaggccaccgatgcg
gatagtgaaagcagaggcgaggtgtattacctactcggtgctgacgctcccaccattttt
gacttggatcggtcaaccggggtgctgacggtgtccacttcgcttgaccgagaagaaaag
gagacgtatcgattcatggtgcgggctgtggaccgtggcacgccgaggaaggaatcaatc
gccactgtgattatcaccgtccaggatcggaatgacaacagtccaaggtttatcaacaag
gacttcaccttctttgtaccagagaactttccaggttttggagaaattggtgtactcacg
gttacagatgcagacgctggggagaacggctgggtggcgttgtccatccttaatggaagc
gacatcttcgtaattgatactggacgaggagcactgcgagccaagacccctttggaccgg
gaacaacaaggaacatactatgtttggatcgaggcaattgatggaggcgaaccctctctt
tcttgcatcacaatggtaactgttcttctcctggatgtcaacgataatcctccaactgtt
cttttccctcagtccaaccagtcgtacatgttggtgcttcccaacacacttccaggaacg
tctataacggaggtctacgcggtggaccgggacacgggaatgaacgctgttattgcgtac
agcattattaagagaacggatggagagccaggctcgtttgacatcgacccttacactgga
aacatcacgttgaggaaaaccttgagcaatcgaggcctctacagtttgtgggtcaaagtc
agggaccacggtcagccagaactctactctaccgtgctggtcaacctgtttgtgaatgag
accgtcagcaatgagactctcattcagagtttgttgcctagaagtgtagatattgaccat
ggtgagcttcctccagataaagaagggaggaagggcgaacaagtgccaaatatgtgtggc
gagtaccaagtgttactgcttgcgctgacggctacttgcctgggattgtttctgaccgta
gtgtcgttggtgacttacatttgctgcaagaaaagaaaaccgaaaaagaagaggttagac
attgagattcctttaaaactcaaccatgaaatggtggacaaaaacccaatggagatttca
aacatctga
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