Garra rufa (doctor fish): 141294088
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Entry
141294088 CDS
T11039
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
grf Garra rufa (doctor fish)
Pathway
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
grf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141294088 (col2a1b)
04518 Integrin signaling
141294088 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141294088 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141294088 (col2a1b)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141294088 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
141294088
NCBI-ProteinID:
XP_073682272
LinkDB
All DBs
Position
20:31781344..31836260
Genome browser
AA seq
1490 aa
AA seq
DB search
MILSADSRTLLLFVATLVAFLAVVKCQEEDEQDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGAVLCDEIICEELKDCPKPEIPFGECCPVCAADQPSSPGLPGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGLRGDRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMSGGFDDKAGGAQMGVMQGPMGPMGPRGPPGTNGAPGPQGFQGNPGEAGEPGSSG
PMGPRGPPGPPGKPGDDGEPGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYLGLDG
AKGEPGATGSKGESGSSGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGGAGPPG
PVGTAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGVPGSPGPSGISGNSGSDGLPG
AKGSVGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLAGFKGEAGPKGEFGNAG
PQGALGPAGEEGKRGPRGEPGSPGPVGPTGERGSPGNRGFPGQDGLAGPKGAPGERGVSG
VSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGVRG
TPGVMGFPGPKGGNGEAGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGSAGATGPRGERGFPGERGGVGPQGLQG
PRGLPGTPGTDGPKGSIGPGGTPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGDKGPEG
APGKDGGRGLTGPIGPTGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPPGAAGFAG
PPGADGQPGIKGEQGEGGQKGDAGAPGPQGPSGSPGPQGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTPGEKG
DAGEDGPPGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRG
PPGPVGSPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGSAGAPGAPGGTGAPG
PVGPTGKQGDRGEAGPKGPAGPSGPAGARGMPGPQGPRGDKGEAGDSGDRGQKGHRGFTG
LQGLPGPPGQPGDQGASGPSGPGGARGPPGPVGPAGKEGANGFPGPIGPPGPRGRSGETG
PSGPPGNPGPPGPPGPPGPGIDMSAFAGLSHPEKASDPLGYMRADQAAEGNLQNDAEVDA
TLKSLNNQIENIRSPDGTKKSPARTCRDLKHCHPDWKSGEYWIDPNQGCTVDAMKVFCNM
ETGETCVYPKPANIPRKNWWTTKGTERKHVWFGEAMNGGFHFNYGDDNLAPNTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDEATGNLKKALLLKGSNDVDIRAEGNSRFTYSVLEDG
CKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattcaaggactttactgctatttgtggcaacactagtcgcattt
ttggccgttgtcaaatgccaagaagaggatgaacaagatccaggcagctgtacgcaggac
ggccagttctatagggacaaggacgtgtggaaaccagagccgtgtcgcatttgtgtttgc
gacaccggtgcggtcctgtgcgacgaaatcatctgcgaggagctgaaagactgtcccaaa
cctgagatcccatttggggagtgctgtccagtctgtgccgctgaccagccttcctcccct
ggcttgccaggtgctaagggacaaaaaggggaaccaggagacataacagatgttgtggga
ccaaggggaccagctggtcctatggggccaccaggagaacaagggctgcgaggagataga
ggagagaagggggagaagggaagtccaggtccccggggcagagatggtgagccaggaacc
cctggaaaccccggccctcctggaccgcctgggccaaacggacctccaggccttggtgga
aactttgctgctcagatgtctggtggattcgatgacaaagctggaggagcgcagatggga
gtgatgcaaggaccaatgggtccgatgggtccacgaggaccaccaggcaccaatggagct
cctggcccacaaggatttcaaggcaaccctggagaagccggagagcccggatcatccggc
ccaatgggtcctcgtggcccccctggtcccccaggaaaaccaggagatgatggggaacca
ggcaaacctggaaaaggtggtgaacgtggaccttccggccctcagggagctcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggttatctaggtcttgatggt
gctaaaggagaacccggagccactgggtcaaaaggtgagtccgggtcttctggagaaagt
ggtgctcctggaccaatgggtccacgtggtttacctggtgaaagagggcgtccaggacct
tctggagctgctggtgctcgaggaaatgatggtttacccggtggtgctggtcctcctggt
ccagtcggtacagctggagctcccggtttcccaggatcccctggttctaagggagaagca
gggcctaccggtgctcgtggacctgagggagcacaaggaccccgtggagagtctggcgtc
cctggatctccaggaccttctggaatctctggtaactctggtagtgatggccttcctgga
gccaaaggatcagtgggtgctccaggtatagctggcgctcctggtttcccaggccctcgc
ggccctcctggacctcagggagcgactggacctcttggaccaaagggacagtctggtgat
cctggtctcgcagggttcaagggtgaggctggtcctaaaggggaatttggtaacgctggg
cctcaaggtgcccttggccctgccggagaggaaggtaagcgaggacccagaggagagcct
ggttctcctggacctgtcgggccaactggagagagaggatctcctggtaatcgaggattt
cctggacaagatggtctggctggtccaaagggtgctccaggtgagcgtggggtttcggga
gtgtcagggccaaagggagccagcggagatcctggccggcctggagaacctggtctgcct
ggtgcaaggggtctgacgggacgtccgggtgatgccggtccacagggcaaagttggccca
tctggcgctgctggggaagatggccgtccgggacccccaggccctcagggtgttcgtggt
acacctggagtgatgggattccctggacccaagggtggcaatggtgaggctggaaaatct
ggagagaagggacttgctggagctcctggtttgcgtggtctgcctggtaaagatggtgag
actggtgctgccggaccccctggacctgctggtcctgctggagaaagaggagagcagggt
cagcctggaccctctggcttccagggtcttcccggacctcctggcccccctggtgaaggt
ggaaaacctggtgatcagggtgttccaggagaggctggttccgcaggggccacaggacca
cgtggtgagcgtggtttcccaggagagaggggaggtgtgggaccacagggcctccagggt
cctcgaggtcttccaggaactccaggaactgacggacccaagggatccattggcccaggg
ggaactcctggtgctcagggacctccaggactacagggaatgcctggagagagagggacg
tctggcattcctggaccaaagggtgacagaggtgacaatggtgacaaaggaccggaagga
gctcctggaaaagatggcggaagaggtttaacaggtccaattggtcctactggtccagca
ggacccaacggtgaaaagggagaatctggccctgcaggaccttctggagctgctggtact
cgcggtgttcctggtgacagaggagagactggccctccgggtgctgccggttttgctggt
ccacctggtgcagatggacagcctggcattaagggagagcagggtgaaggtggacagaag
ggtgatgctggtgcaccgggccctcaggggccttctggatctccaggtcctcagggacca
actggtgtgtctggaccaaaaggggctcgtggtgctcaaggaccccctggtgccacaggt
ttccctggagctgctggtagagttggacctcctggtcccaatggtaacccgggtcctgct
ggtcctgctggtcctcctggtaaagatggtccaaagggtgtgcgtggtgatggtggtccc
cctggaagacctggtgacgctggtttgcgtggcccagctgggactcctggcgagaaggga
gatgctggagaagacggtcctcccggtccagatgggccagcaggtcctcagggtctggct
gggcagcgtggtattgttggacttcctggacagcgtggtgaaagaggtttccccggtctc
cctggaccctctggtgagcctggtaaacaaggagctcctggtggacctggagaccgtgga
cctcctggacccgtgggatcacctggtctgacaggacctgctggggaacctggaagagag
ggcaatcctggatctgatggtcctcctggccgagatggttctgcaggaataaagggtgac
agaggtgacactggttcagctggcgctcctggtgctccaggtggtactggtgctcctggt
ccagtcggacccaccggcaaacagggagacagaggagaggccggacccaaaggacctgct
ggaccttcagggcctgctggagctcggggaatgcctggcccacaaggtccgcgcggagat
aagggagaggctggcgattctggtgacagaggacagaaaggacacagaggtttcacaggt
cttcagggtctgcctgggcctcctggccaacctggtgaccaaggtgcttctggaccttct
ggaccaggtggagcaagaggacccccaggccctgttggcccagctggaaaagaaggagca
aatggtttccctggacccatcggaccccctggacctcgtggtcgttctggagagactgga
ccatctggccccccaggaaatcctggtccccccggtcctcctggcccaccagggcctggc
atcgacatgtctgctttcgctggtctgtctcatcctgaaaaggcttctgatcccttgggg
tacatgagggcagaccaagccgctgaaggtaaccttcaaaatgatgcagaggtcgatgcc
actctgaaatccctgaacaaccagatcgagaacatccgtagtcctgatggtactaaaaag
agcccggcccggacttgcagagacctcaaacactgccacccagactggaagagcggtgaa
tactggattgatcctaaccagggctgcactgttgatgctatgaaggtgttctgcaacatg
gagaccggcgagacctgcgtttatccaaaacccgccaatatcccacgcaagaactggtgg
actaccaagggtactgagcgcaaacatgtttggtttggagaagccatgaatggtggattc
cactttaactatggagatgacaacctagcacctaatacagcaagtattcagatgactttc
ttaagactgctgtccacagaggcttcgcagaacctcacctaccactgcaagaacagcgtt
gcctatatggatgaggccactggtaacctgaagaaagctctgttgctgaagggatccaat
gatgttgacatccgagctgagggcaacagccgcttcacatatagtgttctggaggatggt
tgcaagaaacacacaggacaatggagcaagacggtcattgagtacaaatcacagaagact
tcacgcctacccattgtggacattgcgcctatggatattggaggagcaaatcaggagttt
ggagtggacgtgggtgccgtctgtttcttgtaa
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integrated database retrieval system
