Garra rufa (doctor fish): 141294111
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Entry
141294111 CDS
T11039
Symbol
optc
Name
(RefSeq) opticin
KO
K08127
epiphycan
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
grf00535
]
141294111 (optc)
Proteoglycans [BR:
grf00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
141294111 (optc)
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Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRRNT
LRR_9
LRR_5
LRR_LRWD1
LRR_14
Motif
Other DBs
NCBI-GeneID:
141294111
NCBI-ProteinID:
XP_073682294
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Position
20:18883426..18890127
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AA seq
332 aa
AA seq
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MHSQGMAVHRKTSKMALYLVWTLMGFSLSAPPVDLDPAAYDLENYDDSNTLDLNTYGDLY
DYDDLDEEVGTLAPPPTVTQPPAIVPPEDYVEEVTLPPRPTKSPVPSSLDFHDPGLFGPD
TGLGMPSCLLCVCISGSVYCDDSDLTQIPPLPKDTTHFYARFNKITEIRATDFSYLNQLK
RIDLSGNQIGKVNQDAFRSLLQLQDLMLADNNIQALPELPAALRHIDIRNNQLRSSGLHA
EAFKEMKELHFLYLSNNKLDYIPVPLPESLRVLHLQNNNIQSISQDTFCNTHDMNFIRKA
LEDIRLDGNPVDINLYAQAYVCLPRLPIGTPV
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcactctcagggcatggctgttcacagaaaaacatcaaagatggcgctgtatcttgtt
tggaccctgatgggcttcagtctaagtgctcctccagttgatttggaccctgcagcatat
gatctggagaattatgatgactcaaatacattggatctaaacacatacggagacctgtat
gattatgatgacctggatgaggaggttgggaccctggctcctcctccaacagtcactcag
ccaccggctatagttcctccagaggactatgttgaggaagtgacactaccgccccgtccg
acaaagtcacctgtcccttcctctctagacttccatgatccaggcttgtttgggcctgac
acaggcttagggatgccctcctgcctgctgtgtgtgtgtatcagtggcagtgtttactgt
gatgactcagatctgactcagattccccctctccccaaagacaccacacatttctacgct
cgcttcaacaagatcactgagatcagggccacagacttcagctatctcaatcagctgaaa
cggatagacctgagtggaaaccagataggtaaagtgaaccaggatgcttttcgctcactg
cttcagcttcaggatctcatgttggctgataacaacatccaggcccttccagaactccca
gctgccctcagacacattgacattcgcaataaccagctgaggagttcaggcttgcatgca
gaggcctttaaggaaatgaaggaacttcacttcctgtacctgtcaaacaacaagttagac
tacattcccgtacccctacctgagagcttacgagtgctccacctgcagaacaacaatata
cagagcataagccaagatactttctgcaacacccatgacatgaacttcatacggaaagcc
ctggaggacatcaggcttgacggcaaccctgtggacatcaatctttacgcccaggcttat
gtctgcttaccacgactaccaataggaactccagtctag
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